(27 nodes) RmlC-like jelly roll fold network (Fischerella sp. NIES3754)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BAU06840.1	Cupin 2 domain-containing protein; Similar to AA sequence:cyanobase_aa:Npun_F0340. (203 aa)
	BAU04195.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Ava_0670. (164 aa)
	BAU04311.1	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_F3879. (138 aa)
	BAU05193.1	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056. (142 aa)
	BAU05217.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
	BAU05280.1	Hypothetical protein. (249 aa)
	BAU05570.1	Crp/Fnr family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Ava_3066. (232 aa)
	BAU05900.1	Conserved hypothetical protein; similar to AA sequence:cyanobase_aa:AM1_1482. (175 aa)
	BAU05923.1	TonB box-like protein; Similar to AA sequence:cyanobase_aa:Ava_1579. (150 aa)
	BAU06226.1	CRP/FNR family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Npun_F4219. (200 aa)
	BAU06699.1	Cyclic nucleotide-binding domainprotein; Similar to AA sequence:cyanobase_aa:Ava_3536. (858 aa)
	BAU06828.1	Protein of unknown function DUF861, cupin_3; similar to AA sequence:cyanobase_aa:Npun_F1912. (90 aa)
	BAU06866.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:Npun_F5605. (292 aa)
	BAU07026.1	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748. (227 aa)
	BAU07085.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:NIES39_D03440. (123 aa)
	mtnD	Acireductone dioxygenase, ARD; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway. (183 aa)
	BAU07274.1	Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; Similar to AA sequence:cyanobase_aa:Npun_F5890. (979 aa)
	BAU07351.1	Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; Similar to AA sequence:cyanobase_aa:Npun_F3519. (1026 aa)
	BAU07600.1	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_R4501. (126 aa)
	BAU07621.1	Heterocyst differentiation protein HetC; Ab initio prediction:Prodigal:2.6; similar to AA sequence:cyanobase_aa:alr2817. (1045 aa)
	BAU08435.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2809. (237 aa)
	BAU08436.1	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2806. (232 aa)
	BAU08608.1	Toxin secretion ABC transporter; Similar to AA sequence:cyanobase_aa:cce_2355. (874 aa)
	BAU08658.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
	BAU08821.1	Transcriptional regulator NtcA; Similar to AA sequence:cyanobase_aa:Npun_F5511. (223 aa)
	BAU08825.1	CRP/FNR family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Npun_R1565. (379 aa)
	BAU08841.1	Cupin region; Similar to AA sequence:cyanobase_aa:Ava_4979. (153 aa)

Your Current Organism:

Fischerella sp. NIES3754

NCBI taxonomy Id: 1752063
Other names: F. sp. NIES-3754, Fischerella sp. NIES-3754

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAU04311.1	BAU07600.1	FIS3754_01980	FIS3754_35300	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_F3879.	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_R4501.	0.904
BAU05193.1	BAU05570.1	FIS3754_10870	FIS3754_14690	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	Crp/Fnr family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Ava_3066.	0.922
BAU05193.1	BAU07026.1	FIS3754_10870	FIS3754_29500	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	0.921
BAU05193.1	BAU08821.1	FIS3754_10870	FIS3754_47790	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	Transcriptional regulator NtcA; Similar to AA sequence:cyanobase_aa:Npun_F5511.	0.701
BAU05217.1	BAU08658.1	FIS3754_11110	FIS3754_46060	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.914
BAU05570.1	BAU05193.1	FIS3754_14690	FIS3754_10870	Crp/Fnr family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Ava_3066.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	0.922
BAU05570.1	BAU07026.1	FIS3754_14690	FIS3754_29500	Crp/Fnr family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Ava_3066.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	0.914
BAU07026.1	BAU05193.1	FIS3754_29500	FIS3754_10870	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	0.921
BAU07026.1	BAU05570.1	FIS3754_29500	FIS3754_14690	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	Crp/Fnr family transcriptional regulator; Similar to AA sequence:cyanobase_aa:Ava_3066.	0.914
BAU07026.1	BAU08821.1	FIS3754_29500	FIS3754_47790	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	Transcriptional regulator NtcA; Similar to AA sequence:cyanobase_aa:Npun_F5511.	0.663
BAU07274.1	BAU08608.1	FIS3754_32020	FIS3754_45560	Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; Similar to AA sequence:cyanobase_aa:Npun_F5890.	Toxin secretion ABC transporter; Similar to AA sequence:cyanobase_aa:cce_2355.	0.435
BAU07600.1	BAU04311.1	FIS3754_35300	FIS3754_01980	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_R4501.	Mannose-6-phosphate isomerase, type II; Similar to AA sequence:cyanobase_aa:Npun_F3879.	0.904
BAU08435.1	BAU08436.1	FIS3754_43810	FIS3754_43820	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2809.	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2806.	0.500
BAU08436.1	BAU08435.1	FIS3754_43820	FIS3754_43810	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2806.	Hypothetical protein; Similar to AA sequence:cyanobase_aa:cce_2809.	0.500
BAU08608.1	BAU07274.1	FIS3754_45560	FIS3754_32020	Toxin secretion ABC transporter; Similar to AA sequence:cyanobase_aa:cce_2355.	Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; Similar to AA sequence:cyanobase_aa:Npun_F5890.	0.435
BAU08658.1	BAU05217.1	FIS3754_46060	FIS3754_11110	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.914
BAU08821.1	BAU05193.1	FIS3754_47790	FIS3754_10870	Transcriptional regulator NtcA; Similar to AA sequence:cyanobase_aa:Npun_F5511.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F4056.	0.701
BAU08821.1	BAU07026.1	FIS3754_47790	FIS3754_29500	Transcriptional regulator NtcA; Similar to AA sequence:cyanobase_aa:Npun_F5511.	Cyclic nucleotide-binding protein; Similar to AA sequence:cyanobase_aa:Npun_F2748.	0.663