(12 nodes) Antiporter activity, and Na+/H+ antiporter subunit E network (Serinicoccus sp. JLT9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGUI_1513	Na(+) H(+) antiporter subunit B. (994 aa)
	SGUI_1514	Na(+) H(+) antiporter subunit C. (110 aa)
	SGUI_1515	Na(+) H(+) antiporter subunit D. (505 aa)
	SGUI_1516	Na(+) H(+) antiporter subunit E. (125 aa)
	SGUI_1517	Na(+) H(+) antiporter subunit F. (86 aa)
	SGUI_1518	Na(+) H(+) antiporter subunit G. (112 aa)
	SGUI_1918	Na(+) H(+) antiporter subunit B. (968 aa)
	SGUI_1919	Na(+) H(+) antiporter subunit C. (140 aa)
	SGUI_1920	Na(+) H(+) antiporter subunit D. (517 aa)
	SGUI_1921	Na(+) H(+) antiporter subunit E. (175 aa)
	SGUI_1922	Na(+) H(+) antiporter subunit F. (107 aa)
	SGUI_1923	Na(+) H(+) antiporter subunit G. (112 aa)

Your Current Organism:

Serinicoccus sp. JLT9

NCBI taxonomy Id: 1758689
Other names: S. sp. JLT9

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SGUI_1513	SGUI_1514	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit C.	0.999
SGUI_1513	SGUI_1515	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit D.	0.999
SGUI_1513	SGUI_1516	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit E.	0.999
SGUI_1513	SGUI_1517	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit F.	0.996
SGUI_1513	SGUI_1518	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit G.	0.998
SGUI_1513	SGUI_1918	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit B.	0.992
SGUI_1513	SGUI_1919	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit C.	0.999
SGUI_1513	SGUI_1920	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit D.	0.998
SGUI_1513	SGUI_1921	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit E.	0.996
SGUI_1513	SGUI_1922	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit F.	0.992
SGUI_1513	SGUI_1923	Na(+) H(+) antiporter subunit B.	Na(+) H(+) antiporter subunit G.	0.998
SGUI_1514	SGUI_1513	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit B.	0.999
SGUI_1514	SGUI_1515	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit D.	0.997
SGUI_1514	SGUI_1516	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit E.	0.997
SGUI_1514	SGUI_1517	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit F.	0.989
SGUI_1514	SGUI_1518	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit G.	0.981
SGUI_1514	SGUI_1918	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit B.	0.999
SGUI_1514	SGUI_1920	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit D.	0.990
SGUI_1514	SGUI_1921	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit E.	0.981
SGUI_1514	SGUI_1922	Na(+) H(+) antiporter subunit C.	Na(+) H(+) antiporter subunit F.	0.980