15 items (Serinicoccus sp. JLT9) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGUI_0904	Protein of unknown function DUF214. (363 aa)
	SGUI_0905	ABC transporter, ATP-binding protein. (230 aa)
	SGUI_0906	Hypothetical protein. (123 aa)
	SGUI_0907	Mobile element protein. (511 aa)
	SGUI_0908	Mobile element protein; Belongs to the DnaA family. (266 aa)
	SGUI_1633	Putative membrane protein. (1215 aa)
	SGUI_1634	Putative membrane protein. (922 aa)
	SGUI_1635	ABC transporter ATP-binding protein. (324 aa)
	SGUI_1636	ABC-transporter ATP binding protein. (239 aa)
	SGUI_1667	Protein of unknown function DUF214. (346 aa)
	SGUI_1668	ABC transporter, ATP-binding protein. (233 aa)
	SGUI_1669	Putative peptidoglycan binding domain 1. (285 aa)
	SGUI_2345	Methionine ABC transporter ATP-binding protein. (251 aa)
	SGUI_2346	Putative ABC transporter protein. (829 aa)
	SGUI_2642	Hypothetical protein. (348 aa)

Your Current Organism:

Serinicoccus sp. JLT9

NCBI taxonomy Id: 1758689
Other names: S. sp. JLT9

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SGUI_0904	SGUI_0905	Protein of unknown function DUF214.	ABC transporter, ATP-binding protein.	0.978
SGUI_0904	SGUI_0906	Protein of unknown function DUF214.	Hypothetical protein.	0.751
SGUI_0904	SGUI_0907	Protein of unknown function DUF214.	Mobile element protein.	0.503
SGUI_0904	SGUI_0908	Protein of unknown function DUF214.	Mobile element protein; Belongs to the DnaA family.	0.503
SGUI_0904	SGUI_1633	Protein of unknown function DUF214.	Putative membrane protein.	0.790
SGUI_0904	SGUI_1634	Protein of unknown function DUF214.	Putative membrane protein.	0.787
SGUI_0904	SGUI_1635	Protein of unknown function DUF214.	ABC transporter ATP-binding protein.	0.847
SGUI_0904	SGUI_1636	Protein of unknown function DUF214.	ABC-transporter ATP binding protein.	0.821
SGUI_0904	SGUI_1668	Protein of unknown function DUF214.	ABC transporter, ATP-binding protein.	0.909
SGUI_0904	SGUI_1669	Protein of unknown function DUF214.	Putative peptidoglycan binding domain 1.	0.783
SGUI_0904	SGUI_2345	Protein of unknown function DUF214.	Methionine ABC transporter ATP-binding protein.	0.821
SGUI_0904	SGUI_2642	Protein of unknown function DUF214.	Hypothetical protein.	0.608
SGUI_0905	SGUI_0904	ABC transporter, ATP-binding protein.	Protein of unknown function DUF214.	0.978
SGUI_0905	SGUI_0906	ABC transporter, ATP-binding protein.	Hypothetical protein.	0.756
SGUI_0905	SGUI_0907	ABC transporter, ATP-binding protein.	Mobile element protein.	0.510
SGUI_0905	SGUI_0908	ABC transporter, ATP-binding protein.	Mobile element protein; Belongs to the DnaA family.	0.510
SGUI_0905	SGUI_1633	ABC transporter, ATP-binding protein.	Putative membrane protein.	0.695
SGUI_0905	SGUI_1634	ABC transporter, ATP-binding protein.	Putative membrane protein.	0.734
SGUI_0905	SGUI_1667	ABC transporter, ATP-binding protein.	Protein of unknown function DUF214.	0.913
SGUI_0905	SGUI_1669	ABC transporter, ATP-binding protein.	Putative peptidoglycan binding domain 1.	0.495