(41 nodes) Mixed, incl. Secretion by the type IV secretion system, and Conjugal transfer protein TrbF network (Sphingopyxis sp. H050)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KTE20491.1	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	KTE20492.1	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	KTE20493.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (90 aa)
	KTE20494.1	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	KTE20495.1	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	KTE20496.1	Conjugal transfer protein TrbK; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	KTE20497.1	Conjugal transfer protein TrbL; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	KTE20498.1	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KTE20499.1	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	KTE20500.1	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	KTE20501.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	KTE20669.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	KTE20670.1	Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	KTE20671.1	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	KTE20672.1	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	KTE20673.1	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	KTE20674.1	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	KTE20675.1	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (822 aa)
	KTE20798.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	KTE20676.1	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	KTE20677.1	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	KTE20678.1	CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	KTE20799.1	Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology. (675 aa)
	KTE18343.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	KTE18426.1	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ATE67_18515	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KTE18344.1	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	KTE18345.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
	KTE18428.1	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KTE18346.1	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (811 aa)
	KTE18347.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	KTE18348.1	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	KTE18349.1	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	KTE17975.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (79 aa)
	KTE17976.1	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	KTE17977.1	Conjugal transfer protein TrbK; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
	KTE17978.1	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	KTE17979.1	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	KTE17980.1	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	KTE17981.1	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	KTE17982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)

Your Current Organism:

Sphingopyxis sp. H050

NCBI taxonomy Id: 1759072
Other names: S. sp. H050

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATE67_18515	KTE17975.1	ATE67_18515	ATE67_20075	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.847
ATE67_18515	KTE17976.1	ATE67_18515	ATE67_20080	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
ATE67_18515	KTE17978.1	ATE67_18515	ATE67_20090	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.854
ATE67_18515	KTE17980.1	ATE67_18515	ATE67_20100	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
ATE67_18515	KTE17981.1	ATE67_18515	ATE67_20105	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ATE67_18515	KTE17982.1	ATE67_18515	ATE67_20110	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
ATE67_18515	KTE18343.1	ATE67_18515	ATE67_18500	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
ATE67_18515	KTE18344.1	ATE67_18515	ATE67_18520	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbL; Type IV secretion VirB6 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
ATE67_18515	KTE18345.1	ATE67_18515	ATE67_18525	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ATE67_18515	KTE18346.1	ATE67_18515	ATE67_18535	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
ATE67_18515	KTE18347.1	ATE67_18515	ATE67_18540	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
ATE67_18515	KTE18348.1	ATE67_18515	ATE67_18545	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
ATE67_18515	KTE18349.1	ATE67_18515	ATE67_18550	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
ATE67_18515	KTE18426.1	ATE67_18515	ATE67_18505	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
ATE67_18515	KTE18428.1	ATE67_18515	ATE67_18530	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ATE67_18515	KTE20491.1	ATE67_18515	ATE67_09550	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ATE67_18515	KTE20492.1	ATE67_18515	ATE67_09555	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
ATE67_18515	KTE20493.1	ATE67_18515	ATE67_09560	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
ATE67_18515	KTE20494.1	ATE67_18515	ATE67_09565	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ATE67_18515	KTE20495.1	ATE67_18515	ATE67_09570	Conjugal transfer protein TrbF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860