(43 nodes) Mixed, incl. Cytochrome P450, conserved site, and AMP-binding enzyme network (Sphingopyxis sp. HIX)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KTE46420.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (919 aa)
	KTE46468.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	KTE45699.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (418 aa)
	KTE44940.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
	KTE44941.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (396 aa)
	KTE44942.1	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (491 aa)
	KTE44967.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	KTE42425.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	ATE62_06425	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (905 aa)
	KTE40753.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (464 aa)
	KTE40448.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	KTE40406.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	KTE40452.1	Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	ATE62_08265	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	KTE40082.1	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	KTE40083.1	AMP-dependent acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	KTE39516.1	Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1061 aa)
	KTE38585.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (717 aa)
	KTE38586.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	KTE38587.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (417 aa)
	KTE38620.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	ATE62_11145	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (865 aa)
	KTE38373.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	KTE38374.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (825 aa)
	KTE38375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	KTE38376.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	KTE38377.1	Nitrate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	KTE38378.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	KTE37925.1	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	KTE37745.1	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	KTE37746.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (420 aa)
	KTE35351.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (428 aa)
	KTE33741.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	KTE33751.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	KTE33752.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	KTE33767.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (404 aa)
	KTE33768.1	fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	KTE33769.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	KTE33481.1	4-coumarate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	KTE32048.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	KTE32057.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	KTE31897.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	KTE29496.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (410 aa)

Your Current Organism:

Sphingopyxis sp. HIX

NCBI taxonomy Id: 1759074
Other names: S. sp. HIX

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATE62_06425	KTE29496.1	ATE62_06425	ATE62_20915	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE33767.1	ATE62_06425	ATE62_16765	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE35351.1	ATE62_06425	ATE62_15395	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE37746.1	ATE62_06425	ATE62_12570	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE37925.1	ATE62_06425	ATE62_12410	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
ATE62_06425	KTE38587.1	ATE62_06425	ATE62_10780	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE39516.1	ATE62_06425	ATE62_08905	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ATE62_06425	KTE40753.1	ATE62_06425	ATE62_07475	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE44941.1	ATE62_06425	ATE62_02420	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE45699.1	ATE62_06425	ATE62_01860	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.497
ATE62_06425	KTE46420.1	ATE62_06425	ATE62_00295	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ATE62_06425	KTE46468.1	ATE62_06425	ATE62_00560	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
ATE62_08265	KTE33741.1	ATE62_08265	ATE62_16630	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ATE62_08265	KTE37745.1	ATE62_08265	ATE62_12565	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ATE62_08265	KTE40082.1	ATE62_08265	ATE62_08270	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
ATE62_08265	KTE40083.1	ATE62_08265	ATE62_08275	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-dependent acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ATE62_08265	KTE40406.1	ATE62_08265	ATE62_07830	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ATE62_08265	KTE42425.1	ATE62_08265	ATE62_05230	3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ATE62_11145	KTE31897.1	ATE62_11145	ATE62_18735	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
ATE62_11145	KTE32048.1	ATE62_11145	ATE62_18490	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969