(34 nodes) Mixed, incl. Cellular polysaccharide biosynthetic process, and Glycoside hydrolase/deacetylase, beta/alpha-barrel network (Sphingopyxis sp. HIX)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KTE39818.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	KTE38760.1	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	KTE38761.1	Glycosyltransferase WbuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	KTE38237.1	WalW protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	KTE38073.1	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	KTE36465.1	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	KTE36467.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
	KTE36478.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	KTE36479.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	KTE36470.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	KTE34026.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	KTE34060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
	KTE34027.1	Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	KTE34028.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	KTE34029.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	KTE32774.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KTE32775.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	KTE32776.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	KTE32777.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	KTE32778.1	AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	KTE32779.1	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	KTE32780.1	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	KTE32781.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
	KTE32782.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	KTE32783.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	KTE32784.1	General secretion pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	KTE32785.1	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KTE32809.1	FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	KTE32786.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KTE32788.1	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	KTE31719.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
	KTE31725.1	PEP-CTERM-box response regulator transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	KTE31720.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	KTE30950.1	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)

Your Current Organism:

Sphingopyxis sp. HIX

NCBI taxonomy Id: 1759074
Other names: S. sp. HIX

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KTE30950.1	KTE31719.1	ATE62_20130	ATE62_19570	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KTE30950.1	KTE31720.1	ATE62_20130	ATE62_19580	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KTE30950.1	KTE32774.1	ATE62_20130	ATE62_17580	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
KTE30950.1	KTE32775.1	ATE62_20130	ATE62_17585	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KTE30950.1	KTE32776.1	ATE62_20130	ATE62_17590	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
KTE30950.1	KTE32777.1	ATE62_20130	ATE62_17595	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
KTE30950.1	KTE32779.1	ATE62_20130	ATE62_17605	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
KTE30950.1	KTE32780.1	ATE62_20130	ATE62_17610	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide export protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
KTE30950.1	KTE32781.1	ATE62_20130	ATE62_17615	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
KTE30950.1	KTE32782.1	ATE62_20130	ATE62_17620	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
KTE30950.1	KTE32785.1	ATE62_20130	ATE62_17635	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KTE30950.1	KTE32786.1	ATE62_20130	ATE62_17645	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KTE30950.1	KTE32809.1	ATE62_20130	ATE62_17640	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	FemAB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KTE30950.1	KTE36479.1	ATE62_20130	ATE62_14865	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KTE30950.1	KTE38073.1	ATE62_20130	ATE62_12075	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KTE30950.1	KTE38237.1	ATE62_20130	ATE62_11675	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	WalW protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
KTE30950.1	KTE38760.1	ATE62_20130	ATE62_10220	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
KTE30950.1	KTE38761.1	ATE62_20130	ATE62_10225	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase WbuB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KTE31719.1	KTE30950.1	ATE62_19570	ATE62_20130	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KTE31719.1	KTE31720.1	ATE62_19570	ATE62_19580	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893