(29 nodes) Cellular polysaccharide biosynthetic process network (Sphingopyxis sp. HIX)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KTE43593.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	KTE43599.1	Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	KTE42349.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	KTE41464.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)
	KTE41472.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	KTE41476.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (371 aa)
	KTE41484.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	KTE41487.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	KTE41490.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (741 aa)
	KTE41502.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	KTE38761.1	Glycosyltransferase WbuB; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	KTE38799.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	KTE38194.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	KTE38208.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	KTE36479.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	KTE35331.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
	KTE35332.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	KTE32777.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	KTE32781.1	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
	KTE32782.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	KTE32786.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KTE32789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	KTE30950.1	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	KTE26957.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (278 aa)
	KTE26106.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	KTE25688.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (638 aa)
	KTE24648.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	KTE44297.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (623 aa)
	KTE44298.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (624 aa)

Your Current Organism:

Sphingopyxis sp. HIX

NCBI taxonomy Id: 1759074
Other names: S. sp. HIX

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KTE24648.1	KTE43593.1	ATE62_22440	ATE62_03925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
KTE25688.1	KTE41490.1	ATE62_22230	ATE62_06355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
KTE30950.1	KTE32777.1	ATE62_20130	ATE62_17595	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
KTE30950.1	KTE32781.1	ATE62_20130	ATE62_17615	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
KTE30950.1	KTE32782.1	ATE62_20130	ATE62_17620	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
KTE30950.1	KTE32786.1	ATE62_20130	ATE62_17645	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KTE30950.1	KTE36479.1	ATE62_20130	ATE62_14865	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KTE30950.1	KTE38761.1	ATE62_20130	ATE62_10225	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase WbuB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KTE30950.1	KTE41490.1	ATE62_20130	ATE62_06355	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
KTE32777.1	KTE30950.1	ATE62_17595	ATE62_20130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
KTE32777.1	KTE32781.1	ATE62_17595	ATE62_17615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KTE32777.1	KTE32782.1	ATE62_17595	ATE62_17620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KTE32777.1	KTE32786.1	ATE62_17595	ATE62_17645	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KTE32777.1	KTE32789.1	ATE62_17595	ATE62_17660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KTE32777.1	KTE36479.1	ATE62_17595	ATE62_14865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
KTE32781.1	KTE30950.1	ATE62_17615	ATE62_20130	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsule biosynthesis protein CapK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.680
KTE32781.1	KTE32777.1	ATE62_17615	ATE62_17595	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KTE32781.1	KTE32782.1	ATE62_17615	ATE62_17620	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
KTE32781.1	KTE32786.1	ATE62_17615	ATE62_17645	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
KTE32781.1	KTE32789.1	ATE62_17615	ATE62_17660	Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506