(7 nodes) Styrene degradation network (Sphingopyxis sp. HIX)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KTE31520.1	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	KTE32053.1	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KTE40447.1	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	KTE40413.1	Catechol 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	KTE38820.1	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	KTE34024.1	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	KTE32052.1	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)

Your Current Organism:

Sphingopyxis sp. HIX

NCBI taxonomy Id: 1759074
Other names: S. sp. HIX

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KTE31520.1	KTE34024.1	ATE62_19745	ATE62_16440	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
KTE32052.1	KTE32053.1	ATE62_18515	ATE62_18520	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KTE32053.1	KTE32052.1	ATE62_18520	ATE62_18515	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KTE34024.1	KTE31520.1	ATE62_16440	ATE62_19745	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
KTE40413.1	KTE40447.1	ATE62_07870	ATE62_07795	Catechol 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KTE40447.1	KTE40413.1	ATE62_07795	ATE62_07870	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catechol 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534