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ahcY ahcY cysJ cysJ Atu0267 Atu0267 Atu0268 Atu0268 xseA xseA pfs pfs cysK cysK metK metK metZ metZ Atu0746 Atu0746 xseB xseB Atu0748 Atu0748 bioY bioY Atu0750 Atu0750 Atu0751 Atu0751 Atu0752 Atu0752 gpmB gpmB Atu0759 Atu0759 cysN cysN cysD-2 cysD-2 cysH cysH Atu0820 Atu0820 cysT cysT Atu0822 Atu0822 cysA1 cysA1 cysS cysS hemB hemB Atu1215 Atu1215 alaS alaS cysK-2 cysK-2 cysD cysD aspB-2 aspB-2 serA serA metF metF Atu1453 Atu1453 cysG cysG Atu1455 Atu1455 cysI cysI Atu1457 Atu1457 mvrA mvrA cobP cobP cysE cysE cysE-2 cysE-2 metC metC hemN-2 hemN-2 Atu1654 Atu1654 cobT cobT cobS cobS metF-3 metF-3 metH metH hemF hemF hemA hemA hemC hemC hem4 hem4 metA metA cobB cobB cobA cobA cbiD cbiD cobM cobM chiG chiG cobL cobL cobK cobK cobJ cobJ cobI cobI cbiC cbiC cobG cobG cobN cobN cobW cobW Atu2806 Atu2806 cobO cobO cbiP cbiP cobD cobD cobC cobC Atu2834 Atu2834 hemE hemE cysA2 cysA2 Atu3502 Atu3502 Atu3503 Atu3503 Atu3504 Atu3504 Atu3593 Atu3593 cobT-2 cobT-2 cobS-2 cobS-2 serA-2 serA-2 serC serC mdeA-2 mdeA-2 metE metE cysG-2 cysG-2 metN metN Atu4488 Atu4488 Atu4489 Atu4489 hemL hemL
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ahcYS-adenosylhomocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (466 aa)
cysJSulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. (589 aa)
Atu0267Hypothetical protein. (117 aa)
Atu0268Hypothetical protein. (80 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (532 aa)
pfs5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. (212 aa)
cysKCysteine synthase. (322 aa)
metKS-adenosylmethionine synthetase; Belongs to the AdoMet synthase family. (420 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (394 aa)
Atu0746Conserved hypothetical protein; Belongs to the pirin family. (307 aa)
xseBExodeoxyribonuclease small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (84 aa)
Atu0748Deacetylase. (311 aa)
bioYBiotin synthesis BioY protein. (187 aa)
Atu0750ABC transporter, membrane spanning protein. (210 aa)
Atu0751ABC transporter, nucleotide binding/ATPase protein (cobalt). (226 aa)
Atu0752Conserved hypothetical protein. (398 aa)
gpmBPhosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. (196 aa)
Atu0759Conserved hypothetical protein. (149 aa)
cysNSulfate adenylate transferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (494 aa)
cysD-2Sulfate adenylate transferase, subunit 2. (317 aa)
cysHPhosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (253 aa)
Atu0820ABC transporter, substrate binding protein (sulfate). (341 aa)
cysTABC transporter, membrane spanning protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (285 aa)
Atu0822ABC transporter, membrane spanning protein. (290 aa)
cysA1ABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (346 aa)
cysScysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (461 aa)
hemBDelta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (337 aa)
Atu1215Thiosulfate sulfurtransferase. (473 aa)
alaSalanyl-tRNA synthetase. (245 aa)
cysK-2Cysteine synthase. (345 aa)
cysDO-acetylhomoserine sulfhydrylase. (427 aa)
aspB-2Aspartate transaminase. (387 aa)
serAPhosphoglycerate dehydrogenase. (328 aa)
metFMethylenetetrahydrofolate reductase. (306 aa)
Atu1453Conserved hypothetical protein. (195 aa)
cysGSiroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. (487 aa)
Atu1455Conserved hypothetical protein. (104 aa)
cysISulfite reductase (NADPH) hemoprotein beta-component. (556 aa)
Atu1457Conserved hypothetical protein. (168 aa)
mvrAFerredoxin NADP+ reductase. (270 aa)
cobPBifunctional adenosylcobalamin biosynthesis protein cobP; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate. (173 aa)
cysESerine acetyltransferase. (200 aa)
cysE-2Serine acetyltransferase. (274 aa)
metCCystathionine beta lyase. (395 aa)
hemN-2Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (449 aa)
Atu1654Nitroreductase. (228 aa)
cobTCobyrinic acid synthase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). (344 aa)
cobSCobalamin biosynthesis protein; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family. (261 aa)
metF-3Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (296 aa)
metHMethionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1257 aa)
hemFCoproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. (303 aa)
hemA5-aminolevulinate synthase. (347 aa)
hemCPorphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (309 aa)
hem4Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (246 aa)
metAHomoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. (308 aa)
cobBCobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. (438 aa)
cobAuroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family. (262 aa)
cbiDCobalamin biosynthetic protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. (378 aa)
cobMPrecorrin-4 C11-methyltransferase; Belongs to the precorrin methyltransferase family. (257 aa)
chiGCobalamin biosynthesis protein. (145 aa)
cobLPrecorrin-6y methyltransferase. (419 aa)
cobKPrecorrin-6x reductase. (260 aa)
cobJprecorrin-3B C17-methyltransferase. (253 aa)
cobIPrecorrin-2 C20 methyltransferase; Belongs to the precorrin methyltransferase family. (255 aa)
cbiCprecorrin-8X methylmutase. (210 aa)
cobGCobalamin biosynthesis associated protein. (451 aa)
cobNCobaltochelatase subunit. (1116 aa)
cobWCobalamin synthesis protein. (345 aa)
Atu2806Conserved hypothetical protein. (152 aa)
cobOcob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids. (205 aa)
cbiPCobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (485 aa)
cobDCobalamin biosynthesis protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (321 aa)
cobCCobalamin biosynthetic protein. (348 aa)
Atu2834Conserved hypothetical protein. (165 aa)
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (344 aa)
cysA2ABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (341 aa)
Atu3502ABC transporter, membrane spanning protein. (295 aa)
Atu3503ABC transporter, membrane spanning protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (277 aa)
Atu3504ABC transporter, substrate binding protein (sulfate). (328 aa)
Atu3593Conserved hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa)
cobT-2Cobyrinic acid synthase. (634 aa)
cobS-2Cobalamin biosynthesis protein. (329 aa)
serA-2D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (531 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (392 aa)
mdeA-2Methionine gamma-lyase. (427 aa)
metE5-methyltetrahydropteroyltriglutamate- homocysteine methyltransferase. (342 aa)
cysG-2Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. (475 aa)
metNABC transporter, nucleotide binding/ATPase protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (346 aa)
Atu4488ABC transporter, membrane spanning protein. (222 aa)
Atu4489Outer membrane lipoprotein. (259 aa)
hemLGlutamate-1-semialdehyde 2,1-aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (467 aa)
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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