STRINGSTRING
ubiA ubiA Atu0881 Atu0881 Atu0882 Atu0882 fixS fixS fixI fixI fixH fixH fixG fixG Atu1531 Atu1531 Atu1532 Atu1532 Atu1533 Atu1533 fixP fixP fixQ fixQ fixO fixO fixN fixN hvsT hvsT Atu1540 Atu1540 Atu1541 Atu1541 fnrN fnrN Atu1730 Atu1730 Atu2283 Atu2283 sinR sinR Atu3191 Atu3191 Atu4296 Atu4296 Atu4297 Atu4297 nnrR nnrR nirV nirV nirK nirK Atu4383 Atu4383 Atu4384 Atu4384 Atu4385 Atu4385 norD norD norQ norQ norB norB norC norC norE norE nnrU nnrU ubiX ubiX Atu4394 Atu4394 Atu4395 Atu4395 Atu4396 Atu4396 Atu4397 Atu4397 Atu4398 Atu4398 Atu4399 Atu4399 Atu4400 Atu4400 Atu4401 Atu4401 Atu4402 Atu4402 Atu4403 Atu4403 Atu4404 Atu4404 napE napE napF napF napD napD napA napA napB napB napC napC Atu8040 Atu8040 norF norF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ubiA4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (317 aa)
Atu0881Cytochrome C-556; Low-spin monoheme cytochrome c. (135 aa)
Atu0882Conserved hypothetical protein. (306 aa)
fixSNitrogen fixation protein FixS. (53 aa)
fixINitrogen fixation protein FixI. (763 aa)
fixHNitrogen fixation protein FixH. (166 aa)
fixGNitrogen fixation protein FixG. (527 aa)
Atu1531Conserved hypothetical protein. (134 aa)
Atu1532Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein. (118 aa)
Atu1533Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein. (148 aa)
fixPCytochrome-c oxidase, FixP chain; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (287 aa)
fixQCytochrome c oxidase, FixQ chain. (50 aa)
fixOCytochrome C oxidase, FixO chain. (243 aa)
fixNCytochrome-c oxidase, FixN chain; Belongs to the heme-copper respiratory oxidase family. (540 aa)
hvsTSulfate permease. (537 aa)
Atu1540Conserved hypothetical protein. (205 aa)
Atu1541Conserved hypothetical protein. (691 aa)
fnrNTranscriptional activator, Crp family. (241 aa)
Atu1730Conserved hypothetical protein. (281 aa)
Atu2283Pseudoazurin. (150 aa)
sinRRegulator of Biofilm formation, Fnr Family. (229 aa)
Atu3191Outer membrane protein. (228 aa)
Atu4296Dehydrogenase. (527 aa)
Atu4297Transcriptional regulator, AraC family. (297 aa)
nnrRTranscriptional regulatory, Crp family. (233 aa)
nirVNitrite reductase, NirV precursor. (305 aa)
nirKNitrite reductase, copper-containing; Belongs to the multicopper oxidase family. (380 aa)
Atu4383Conserved hypothetical protein. (410 aa)
Atu4384Conserved hypothetical protein. (177 aa)
Atu4385Conserved hypothetical protein. (149 aa)
norDNitric oxide reductase NorD protein. (632 aa)
norQNitric oxide reductase NorQ protein. (270 aa)
norBNitric oxide reductase, cytochrome b subunit. (448 aa)
norCNitric oxide reductase, cytochrome c-containing subunit. (150 aa)
norENitric oxide reductase NorE protein. (177 aa)
nnrUDenitrification regulatory protein. (225 aa)
ubiX3-polyprenyl-4-hydroxybenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (196 aa)
Atu4394Conserved hypothetical protein; Belongs to the UbiD family. (518 aa)
Atu4395Conserved hypothetical protein. (116 aa)
Atu4396Conserved hypothetical protein. (171 aa)
Atu4397Protease. (325 aa)
Atu4398Conserved hypothetical protein. (312 aa)
Atu4399Conserved hypothetical protein. (125 aa)
Atu4400Ferrienterobactin-like protein. (717 aa)
Atu4401Conserved hypothetical protein. (327 aa)
Atu4402ABC transporter, membrane spanning protein (anion). (269 aa)
Atu4403ABC transporter, nucleotide binding/ATPase protein (anion). (250 aa)
Atu4404Conserved hypothetical protein. (395 aa)
napEPeriplasmic nitrate reductase protein NapE. (61 aa)
napFPeriplasmic nitrate reductase, ferredoxin-like protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (166 aa)
napDPeriplasmic nitrate reductase, NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (95 aa)
napAPeriplasmic nitrate reductase large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (834 aa)
napBPeriplasmic nitrate reductase small subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (163 aa)
napCPeriplasmic nitrate reductase, cytochrome c-type protein. (233 aa)
Atu8040Conserved hypothetical protein. (55 aa)
norFNorF protein. (99 aa)
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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