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ubiA ubiA Atu2283 Atu2283 nnrR nnrR nirV nirV nirK nirK Atu4383 Atu4383 Atu4384 Atu4384 Atu4385 Atu4385 norD norD norQ norQ norB norB norC norC norE norE nnrU nnrU ubiX ubiX Atu4394 Atu4394 Atu4395 Atu4395 Atu4396 Atu4396 Atu4397 Atu4397 Atu4398 Atu4398 Atu4399 Atu4399 Atu4400 Atu4400 Atu4401 Atu4401 Atu4402 Atu4402 Atu4403 Atu4403 Atu4404 Atu4404 napE napE napF napF napD napD napA napA napB napB napC napC Atu8040 Atu8040 norF norF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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ubiA4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (317 aa)
Atu2283Pseudoazurin. (150 aa)
nnrRTranscriptional regulatory, Crp family. (233 aa)
nirVNitrite reductase, NirV precursor. (305 aa)
nirKNitrite reductase, copper-containing; Belongs to the multicopper oxidase family. (380 aa)
Atu4383Conserved hypothetical protein. (410 aa)
Atu4384Conserved hypothetical protein. (177 aa)
Atu4385Conserved hypothetical protein. (149 aa)
norDNitric oxide reductase NorD protein. (632 aa)
norQNitric oxide reductase NorQ protein. (270 aa)
norBNitric oxide reductase, cytochrome b subunit. (448 aa)
norCNitric oxide reductase, cytochrome c-containing subunit. (150 aa)
norENitric oxide reductase NorE protein. (177 aa)
nnrUDenitrification regulatory protein. (225 aa)
ubiX3-polyprenyl-4-hydroxybenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (196 aa)
Atu4394Conserved hypothetical protein; Belongs to the UbiD family. (518 aa)
Atu4395Conserved hypothetical protein. (116 aa)
Atu4396Conserved hypothetical protein. (171 aa)
Atu4397Protease. (325 aa)
Atu4398Conserved hypothetical protein. (312 aa)
Atu4399Conserved hypothetical protein. (125 aa)
Atu4400Ferrienterobactin-like protein. (717 aa)
Atu4401Conserved hypothetical protein. (327 aa)
Atu4402ABC transporter, membrane spanning protein (anion). (269 aa)
Atu4403ABC transporter, nucleotide binding/ATPase protein (anion). (250 aa)
Atu4404Conserved hypothetical protein. (395 aa)
napEPeriplasmic nitrate reductase protein NapE. (61 aa)
napFPeriplasmic nitrate reductase, ferredoxin-like protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. (166 aa)
napDPeriplasmic nitrate reductase, NapD protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. (95 aa)
napAPeriplasmic nitrate reductase large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. (834 aa)
napBPeriplasmic nitrate reductase small subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. (163 aa)
napCPeriplasmic nitrate reductase, cytochrome c-type protein. (233 aa)
Atu8040Conserved hypothetical protein. (55 aa)
norFNorF protein. (99 aa)
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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