STRINGSTRING
Atu2135 Atu2135 Atu0279 Atu0279 betI betI Atu0993 Atu0993 recO recO Atu1568 Atu1568 Atu1624 Atu1624 Atu2020 Atu2020 betI-2 betI-2 recN recN Atu2320 Atu2320 Atu2384 Atu2384 ameR ameR Atu3075 Atu3075 Atu3115 Atu3115 acrR acrR Atu3798 Atu3798 Atu4199 Atu4199 Atu4217 Atu4217 Atu4317 Atu4317 Atu4477 Atu4477 Atu4530 Atu4530 Atu4873 Atu4873 recQ recQ recR recR Atu0095 Atu0095
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Atu2135Transcriptional regulator, TetR family. (233 aa)
Atu0279Transcriptional regulator, TetR family. (192 aa)
betITranscriptional regulator BetI; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity). (206 aa)
Atu0993Transcriptional regulator, TetR family. (208 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (254 aa)
Atu1568Transcriptional regulator, TetR family. (220 aa)
Atu1624Transcriptional regulator, TetR family. (219 aa)
Atu2020Transcriptional regulator, TetR family. (217 aa)
betI-2Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. (197 aa)
recNDNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (557 aa)
Atu2320Transcriptional regulator, TetR family. (194 aa)
Atu2384Transcriptional regulator, TetR family. (213 aa)
ameRTranscriptional regulator, TetR family. (219 aa)
Atu3075Transcriptional regulator, TetR family. (214 aa)
Atu3115Transcriptional regulator, TetR family. (232 aa)
acrRTranscriptional regulator, TetR family. (207 aa)
Atu3798Transcriptional regulator, TetR family. (204 aa)
Atu4199Transcriptional regulator, TetR family. (190 aa)
Atu4217Transcriptional regulator, TetR family. (195 aa)
Atu4317Transcriptional regulator, TetR family. (190 aa)
Atu4477Transcriptional regulator, TetR family. (228 aa)
Atu4530Transcriptional regulator, TetR family. (230 aa)
Atu4873Transcriptional regulator, TetR family. (190 aa)
recQATP-dependent DNA helicase. (602 aa)
recRRecombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa)
Atu0095Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
Your Current Organism:
Agrobacterium fabrum
NCBI taxonomy Id: 176299
Other names: A. fabrum str. C58, Agrobacterium fabrum str. C58, Agrobacterium tumefaciens (strain C58 / ATCC 33970), Agrobacterium tumefaciens (strain C58), Agrobacterium tumefaciens str. C58, Agrobacterium tumefaciens str. C58 (Cereon), Agrobacterium tumefaciens str. C58 (Dupont), Agrobacterium tumefaciens str. C58 (U. Washington), Rhizobium radiobacter str. C58 (Cereon), Rhizobium radiobacter str. C58 (Dupont), Rhizobium radiobacter str. C58 (U. Washington)
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