Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AT728_27700 | KUF16272.1 | AT728_27700 | AT728_18230 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.536 |
| AT728_27700 | rplT | AT728_27700 | AT728_02110 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.498 |
| AT728_27700 | rplV | AT728_27700 | AT728_09690 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.788 |
| AT728_27700 | rpsG | AT728_27700 | AT728_09605 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.539 |
| AT728_27700 | rpsK | AT728_27700 | AT728_09795 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.905 |
| AT728_27700 | rpsS | AT728_27700 | AT728_09685 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.595 |
| AT728_27700 | rsfS | AT728_27700 | AT728_31595 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome-associated protein IOJAP; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.784 |
| KUF14281.1 | KUF16272.1 | AT728_01255 | AT728_18230 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.532 |
| KUF14281.1 | rplT | AT728_01255 | AT728_02110 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.498 |
| KUF14281.1 | rplV | AT728_01255 | AT728_09690 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.788 |
| KUF14281.1 | rpsG | AT728_01255 | AT728_09605 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.539 |
| KUF14281.1 | rpsK | AT728_01255 | AT728_09795 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.905 |
| KUF14281.1 | rpsS | AT728_01255 | AT728_09685 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.595 |
| KUF14281.1 | rsfS | AT728_01255 | AT728_31595 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome-associated protein IOJAP; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.784 |
| KUF15086.1 | KUF16272.1 | AT728_26850 | AT728_18230 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.541 |
| KUF15086.1 | rplT | AT728_26850 | AT728_02110 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.498 |
| KUF15086.1 | rplV | AT728_26850 | AT728_09690 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.788 |
| KUF15086.1 | rpsG | AT728_26850 | AT728_09605 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.539 |
| KUF15086.1 | rpsK | AT728_26850 | AT728_09795 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.905 |
| KUF15086.1 | rpsS | AT728_26850 | AT728_09685 | RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.595 |
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