(10 nodes) Mixed, incl. PmbA/TldA metallopeptidase domain 1, and Glycosyl hydrolase family 92 network (Mycobacterium kansasii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARG91235.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)
	ARG91353.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (75 aa)
	ARG95496.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	ARG91354.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	ARG95497.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	ARG91355.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ARG91356.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	ARG91357.1	Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	ARG95724.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ARG95840.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)

Your Current Organism:

Mycobacterium kansasii

NCBI taxonomy Id: 1768
Other names: ATCC 12478, CIP 104589, DSM 44162, JCM 6379, M. kansasii, NCTC 13024

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARG91235.1	ARG91354.1	B1T50_03530	B1T50_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ARG91353.1	ARG91354.1	B1T50_04320	B1T50_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
ARG91353.1	ARG95496.1	B1T50_04320	B1T50_04325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ARG91354.1	ARG91235.1	B1T50_04330	B1T50_03530	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ARG91354.1	ARG91353.1	B1T50_04330	B1T50_04320	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.430
ARG91354.1	ARG95496.1	B1T50_04330	B1T50_04325	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ARG91354.1	ARG95497.1	B1T50_04330	B1T50_04335	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARG91355.1	ARG91356.1	B1T50_04340	B1T50_04345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ARG91355.1	ARG91357.1	B1T50_04340	B1T50_04350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ARG91355.1	ARG95497.1	B1T50_04340	B1T50_04335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ARG91356.1	ARG91355.1	B1T50_04345	B1T50_04340	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ARG91356.1	ARG91357.1	B1T50_04345	B1T50_04350	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ARG91357.1	ARG91355.1	B1T50_04350	B1T50_04340	Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
ARG91357.1	ARG91356.1	B1T50_04350	B1T50_04345	Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ARG95496.1	ARG91353.1	B1T50_04325	B1T50_04320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.720
ARG95496.1	ARG91354.1	B1T50_04325	B1T50_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ARG95497.1	ARG91354.1	B1T50_04335	B1T50_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARG95497.1	ARG91355.1	B1T50_04335	B1T50_04340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ARG95497.1	ARG95724.1	B1T50_04335	B1T50_11590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
ARG95724.1	ARG95497.1	B1T50_11590	B1T50_04335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688