(7 nodes) Mixed, incl. Host cell surface binding, and EccD-like transmembrane domain network (Mycobacterium kansasii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARG92965.1	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa)
	ARG95802.1	PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	esxB	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (100 aa)
	esat6	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (95 aa)
	ARG92968.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	ARG92969.1	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	ARG92970.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)

Your Current Organism:

Mycobacterium kansasii

NCBI taxonomy Id: 1768
Other names: ATCC 12478, CIP 104589, DSM 44162, JCM 6379, M. kansasii, NCTC 13024

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARG92965.1	ARG92968.1	B1T50_14545	B1T50_14565	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
ARG92965.1	ARG92969.1	B1T50_14545	B1T50_14570	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
ARG92965.1	ARG92970.1	B1T50_14545	B1T50_14575	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ARG92965.1	ARG95802.1	B1T50_14545	B1T50_14550	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
ARG92965.1	esat6	B1T50_14545	B1T50_14560	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.735
ARG92965.1	esxB	B1T50_14545	B1T50_14555	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.805
ARG92968.1	ARG92965.1	B1T50_14565	B1T50_14545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
ARG92968.1	ARG92969.1	B1T50_14565	B1T50_14570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ARG92968.1	ARG92970.1	B1T50_14565	B1T50_14575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ARG92968.1	ARG95802.1	B1T50_14565	B1T50_14550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
ARG92968.1	esat6	B1T50_14565	B1T50_14560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.820
ARG92968.1	esxB	B1T50_14565	B1T50_14555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.783
ARG92969.1	ARG92965.1	B1T50_14570	B1T50_14545	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
ARG92969.1	ARG92968.1	B1T50_14570	B1T50_14565	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ARG92969.1	ARG92970.1	B1T50_14570	B1T50_14575	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ARG92969.1	esat6	B1T50_14570	B1T50_14560	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.807
ARG92969.1	esxB	B1T50_14570	B1T50_14555	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.865
ARG92970.1	ARG92965.1	B1T50_14575	B1T50_14545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ARG92970.1	ARG92968.1	B1T50_14575	B1T50_14565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ARG92970.1	ARG92969.1	B1T50_14575	B1T50_14570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807