6 items (Erysipelotrichaceae bacterium MTC7)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OCN04693.1	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	OCN04694.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	OCN04695.1	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	OCN04696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
	OCN04697.1	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	OCN04698.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)

Your Current Organism:

Erysipelotrichaceae bacterium MTC7

NCBI taxonomy Id: 1768196
Other names: E. bacterium MTC7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCN04693.1	OCN04694.1	A4S06_10770	A4S06_10775	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OCN04693.1	OCN04695.1	A4S06_10770	A4S06_10780	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OCN04693.1	OCN04696.1	A4S06_10770	A4S06_10785	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OCN04693.1	OCN04697.1	A4S06_10770	A4S06_10790	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
OCN04693.1	OCN04698.1	A4S06_10770	A4S06_10795	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OCN04694.1	OCN04693.1	A4S06_10775	A4S06_10770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OCN04694.1	OCN04695.1	A4S06_10775	A4S06_10780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
OCN04694.1	OCN04696.1	A4S06_10775	A4S06_10785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
OCN04694.1	OCN04697.1	A4S06_10775	A4S06_10790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.890
OCN04694.1	OCN04698.1	A4S06_10775	A4S06_10795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
OCN04695.1	OCN04693.1	A4S06_10780	A4S06_10770	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OCN04695.1	OCN04694.1	A4S06_10780	A4S06_10775	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
OCN04695.1	OCN04696.1	A4S06_10780	A4S06_10785	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OCN04695.1	OCN04697.1	A4S06_10780	A4S06_10790	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
OCN04695.1	OCN04698.1	A4S06_10780	A4S06_10795	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
OCN04696.1	OCN04693.1	A4S06_10785	A4S06_10770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antirestriction protein ArdA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
OCN04696.1	OCN04694.1	A4S06_10785	A4S06_10775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
OCN04696.1	OCN04695.1	A4S06_10785	A4S06_10780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
OCN04696.1	OCN04697.1	A4S06_10785	A4S06_10790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase P60; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
OCN04696.1	OCN04698.1	A4S06_10785	A4S06_10795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972