(4 nodes) Hsp70 protein network (Mycobacterium gordonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OBJ86335.1	Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
	OBJ76441.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	OBJ87992.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)
	dnaK	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (622 aa)

Your Current Organism:

Mycobacterium gordonae

NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBJ76441.1	dnaK	A9W97_07595	A9W97_18445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.561
OBJ86335.1	dnaK	A9W97_18515	A9W97_18445	Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.640
dnaK	OBJ76441.1	A9W97_18445	A9W97_07595	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
dnaK	OBJ86335.1	A9W97_18445	A9W97_18515	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640