(33 nodes) Tuberculosis network (Mycobacterium gordonae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OBJ79870.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	OBJ79825.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (357 aa)
	OBJ79808.1	Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	OBJ92043.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (164 aa)
	OBJ90520.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)
	OBJ83220.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (368 aa)
	OBJ78093.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (96 aa)
	OBJ76176.1	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	OBJ75955.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	OBJ75805.1	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (93 aa)
	OBJ75806.1	Type VII secretion protein EsxI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (94 aa)
	OBJ74759.1	Type VII secretion protein EsxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (100 aa)
	OBJ91786.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	OBJ91875.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	OBJ91083.1	Type VII secretion protein EsxH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (96 aa)
	OBJ90234.1	Molecular chaperone Hsp70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family. (509 aa)
	OBJ89256.1	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (98 aa)
	groEL	Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (397 aa)
	OBJ88284.1	Type VII secretion protein EsxT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (98 aa)
	OBJ88285.1	Type VII secretion protein EsxU; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (108 aa)
	OBJ88302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	OBJ88349.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (376 aa)
	dnaK	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (622 aa)
	OBJ86038.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (774 aa)
	A9W97_20075	Type VII secretion protein EsxI; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (98 aa)
	OBJ82627.1	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family. (98 aa)
	OBJ81820.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	OBJ81984.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (369 aa)
	OBJ81591.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	OBJ81550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	OBJ81487.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (372 aa)
	OBJ81490.1	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (374 aa)
	OBJ80714.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)

Your Current Organism:

Mycobacterium gordonae

NCBI taxonomy Id: 1778
Other names: ATCC 14470, CCUG 21801, CCUG 21811, CIP 104529, DSM 44160, JCM 6382, M. gordonae, NCTC 10267

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OBJ74759.1	OBJ88284.1	A9W97_10625	A9W97_15875	Type VII secretion protein EsxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	Type VII secretion protein EsxT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.996
OBJ74759.1	OBJ88285.1	A9W97_10625	A9W97_15880	Type VII secretion protein EsxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	Type VII secretion protein EsxU; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.463
OBJ74759.1	OBJ91083.1	A9W97_10625	A9W97_12735	Type VII secretion protein EsxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	Type VII secretion protein EsxH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.874
OBJ75805.1	OBJ75806.1	A9W97_09330	A9W97_09335	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	Type VII secretion protein EsxI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.686
OBJ75806.1	OBJ75805.1	A9W97_09335	A9W97_09330	Type VII secretion protein EsxI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.	0.686
OBJ79825.1	OBJ81490.1	A9W97_29670	A9W97_25775	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.777
OBJ79825.1	OBJ81984.1	A9W97_29670	A9W97_25150	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.410
OBJ79825.1	OBJ83220.1	A9W97_29670	A9W97_02110	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.779
OBJ81487.1	OBJ81490.1	A9W97_25755	A9W97_25775	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.775
OBJ81487.1	OBJ81984.1	A9W97_25755	A9W97_25150	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.406
OBJ81487.1	OBJ83220.1	A9W97_25755	A9W97_02110	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.777
OBJ81490.1	OBJ79825.1	A9W97_25775	A9W97_29670	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.777
OBJ81490.1	OBJ81487.1	A9W97_25775	A9W97_25755	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.775
OBJ81490.1	OBJ81984.1	A9W97_25775	A9W97_25150	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.792
OBJ81984.1	OBJ79825.1	A9W97_25150	A9W97_29670	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.410
OBJ81984.1	OBJ81487.1	A9W97_25150	A9W97_25755	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.406
OBJ81984.1	OBJ81490.1	A9W97_25150	A9W97_25775	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.792
OBJ81984.1	OBJ83220.1	A9W97_25150	A9W97_02110	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.796
OBJ81984.1	OBJ88349.1	A9W97_25150	A9W97_16260	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.422
OBJ83220.1	OBJ79825.1	A9W97_02110	A9W97_29670	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.779