43 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_01185	Uncharacterized protein. (990 aa)
	WN55_01180	Protein unc-13 like protein B. (1359 aa)
	WN55_01809	Extended synaptotagmin-2. (804 aa)
	WN55_02225	Vesicle-fusing ATPase 1; Belongs to the AAA ATPase family. (663 aa)
	WN55_02375	Exocyst complex component 5. (693 aa)
	WN55_02941	Cysteine string protein. (237 aa)
	WN55_03479	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family. (630 aa)
	WN55_03800	Synapsin. (689 aa)
	WN55_05342	Syntaxin-6; Belongs to the syntaxin family. (302 aa)
	WN55_04290	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1647 aa)
	WN55_05343	Gamma-soluble NSF attachment protein. (350 aa)
	WN55_04450	Synaptotagmin-7. (506 aa)
	WN55_03280	Calcium-dependent secretion activator. (1397 aa)
	WN55_05538	Protein piccolo. (588 aa)
	WN55_05607	Syntaxin-1B. (196 aa)
	WN55_04945	Fer-1-like protein 6. (1702 aa)
	WN55_07256	Exocyst complex component 8. (713 aa)
	WN55_07416	Syntaxin-8. (246 aa)
	WN55_08444	Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family. (151 aa)
	WN55_07516	Protein EFR3 like protein cmp44E. (766 aa)
	WN55_00044	Syntaxin-12. (267 aa)
	WN55_01758	Synaptotagmin 1. (418 aa)
	WN55_00048	Palmitoyltransferase ZDHHC17. (956 aa)
	WN55_09744	Exocyst complex component 4. (159 aa)
	WN55_09706	Syntaxin-17. (301 aa)
	WN55_05401	Synaptosomal-associated protein 29. (263 aa)
	WN55_08445	Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family. (416 aa)
	WN55_04776	Synaptobrevin. (122 aa)
	WN55_10277	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (276 aa)
	WN55_07775	Otoferlin. (2148 aa)
	WN55_08214	Syntaxin-1A; Belongs to the syntaxin family. (470 aa)
	WN55_08584	Double C2-like domain-containing protein beta. (274 aa)
	WN55_08583	Rab effector Noc2. (462 aa)
	WN55_08191	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (890 aa)
	WN55_08322	Synaptotagmin-C. (705 aa)
	WN55_08516	Secretory carrier-associated membrane protein. (353 aa)
	WN55_09123	BAI1-associated protein 3. (1192 aa)
	WN55_09274	SNARE-associated protein Snapin. (159 aa)
	WN55_11076	Synaptotagmin-11. (428 aa)
	WN55_11103	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (684 aa)
	WN55_00264	Regulating synaptic membrane exocytosis protein 2. (1985 aa)
	WN55_11531	Syntaxin-16; Belongs to the syntaxin family. (325 aa)
	WN55_11127	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family. (420 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_00044	WN55_00048	A0A154NW01	A0A154NW13	Syntaxin-12.	Palmitoyltransferase ZDHHC17.	0.417
WN55_00044	WN55_02225	A0A154NW01	A0A154PFT3	Syntaxin-12.	Vesicle-fusing ATPase 1; Belongs to the AAA ATPase family.	0.878
WN55_00044	WN55_04776	A0A154NW01	A0A154P1M7	Syntaxin-12.	Synaptobrevin.	0.821
WN55_00044	WN55_05342	A0A154NW01	A0A154PLL2	Syntaxin-12.	Syntaxin-6; Belongs to the syntaxin family.	0.854
WN55_00044	WN55_05343	A0A154NW01	A0A154PLN7	Syntaxin-12.	Gamma-soluble NSF attachment protein.	0.817
WN55_00044	WN55_05401	A0A154NW01	A0A154P0L9	Syntaxin-12.	Synaptosomal-associated protein 29.	0.815
WN55_00044	WN55_05607	A0A154NW01	A0A154PN50	Syntaxin-12.	Syntaxin-1B.	0.757
WN55_00044	WN55_07416	A0A154NW01	A0A154PSF3	Syntaxin-12.	Syntaxin-8.	0.895
WN55_00044	WN55_08214	A0A154NW01	A0A154P512	Syntaxin-12.	Syntaxin-1A; Belongs to the syntaxin family.	0.757
WN55_00044	WN55_08444	A0A154NW01	A0A154PSZ3	Syntaxin-12.	Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.	0.566
WN55_00044	WN55_08445	A0A154NW01	A0A154PTA4	Syntaxin-12.	Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.	0.566
WN55_00044	WN55_10277	A0A154NW01	A0A154P3E2	Syntaxin-12.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.819
WN55_00044	WN55_11531	A0A154NW01	A0A154PCS7	Syntaxin-12.	Syntaxin-16; Belongs to the syntaxin family.	0.498
WN55_00048	WN55_00044	A0A154NW13	A0A154NW01	Palmitoyltransferase ZDHHC17.	Syntaxin-12.	0.417
WN55_00048	WN55_09706	A0A154NW13	A0A154NZ52	Palmitoyltransferase ZDHHC17.	Syntaxin-17.	0.508
WN55_00048	WN55_10277	A0A154NW13	A0A154P3E2	Palmitoyltransferase ZDHHC17.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.443
WN55_00264	WN55_01180	A0A154PCL9	A0A154PEE7	Regulating synaptic membrane exocytosis protein 2.	Protein unc-13 like protein B.	0.999
WN55_00264	WN55_01185	A0A154PCL9	A0A154PEB1	Regulating synaptic membrane exocytosis protein 2.	Uncharacterized protein.	0.999
WN55_00264	WN55_01758	A0A154PCL9	A0A154NW04	Regulating synaptic membrane exocytosis protein 2.	Synaptotagmin 1.	0.727
WN55_00264	WN55_02941	A0A154PCL9	A0A154PIJ0	Regulating synaptic membrane exocytosis protein 2.	Cysteine string protein.	0.979