23 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_02132	Protein 60A. (424 aa)
	WN55_09682	Multiple C2 and transmembrane domain-containing protein 1. (1355 aa)
	WN55_05408	Dystrobrevin beta. (1161 aa)
	WN55_07769	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4. (652 aa)
	WN55_09435	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2. (507 aa)
	WN55_08047	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4. (913 aa)
	WN55_08356	Synaptotagmin-12. (980 aa)
	WN55_10665	Rab3 GTPase-activating protein catalytic subunit. (440 aa)
	WN55_10662	Rab3 GTPase-activating protein catalytic subunit. (485 aa)
	WN55_09274	SNARE-associated protein Snapin. (159 aa)
	WN55_11076	Synaptotagmin-11. (428 aa)
	WN55_11127	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family. (420 aa)
	WN55_01523	Dystrophin, isoforms A/C/F/G/H. (1263 aa)
	WN55_01529	Dystrophin. (3522 aa)
	WN55_03413	Protein 60A. (371 aa)
	WN55_03495	TBC1 domain family member 24. (611 aa)
	WN55_04022	Suppressor of lurcher protein 1. (293 aa)
	WN55_04893	Nuclear factor of activated T-cells 5. (1307 aa)
	WN55_05538	Protein piccolo. (588 aa)
	WN55_05950	Gamma-aminobutyric acid type B receptor subunit 2. (1347 aa)
	WN55_05126	Protein bicaudal D. (856 aa)
	WN55_07462	Dystrophin, isoforms A/C/F/G/H. (638 aa)
	WN55_06883	Uncharacterized protein. (632 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_01523	WN55_01529	A0A154PH74	A0A154PI06	Dystrophin, isoforms A/C/F/G/H.	Dystrophin.	0.680
WN55_01523	WN55_04022	A0A154PH74	A0A154PM06	Dystrophin, isoforms A/C/F/G/H.	Suppressor of lurcher protein 1.	0.578
WN55_01523	WN55_05408	A0A154PH74	A0A154P0D3	Dystrophin, isoforms A/C/F/G/H.	Dystrobrevin beta.	0.767
WN55_01529	WN55_01523	A0A154PI06	A0A154PH74	Dystrophin.	Dystrophin, isoforms A/C/F/G/H.	0.680
WN55_01529	WN55_04022	A0A154PI06	A0A154PM06	Dystrophin.	Suppressor of lurcher protein 1.	0.578
WN55_01529	WN55_05408	A0A154PI06	A0A154P0D3	Dystrophin.	Dystrobrevin beta.	0.651
WN55_04022	WN55_01523	A0A154PM06	A0A154PH74	Suppressor of lurcher protein 1.	Dystrophin, isoforms A/C/F/G/H.	0.578
WN55_04022	WN55_01529	A0A154PM06	A0A154PI06	Suppressor of lurcher protein 1.	Dystrophin.	0.578
WN55_04022	WN55_07462	A0A154PM06	A0A154PS67	Suppressor of lurcher protein 1.	Dystrophin, isoforms A/C/F/G/H.	0.578
WN55_04022	WN55_11127	A0A154PM06	A0A154PDC4	Suppressor of lurcher protein 1.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.846
WN55_05408	WN55_01523	A0A154P0D3	A0A154PH74	Dystrobrevin beta.	Dystrophin, isoforms A/C/F/G/H.	0.767
WN55_05408	WN55_01529	A0A154P0D3	A0A154PI06	Dystrobrevin beta.	Dystrophin.	0.651
WN55_05408	WN55_07462	A0A154P0D3	A0A154PS67	Dystrobrevin beta.	Dystrophin, isoforms A/C/F/G/H.	0.767
WN55_05538	WN55_08356	A0A154PMK8	A0A154P8B2	Protein piccolo.	Synaptotagmin-12.	0.551
WN55_05538	WN55_11076	A0A154PMK8	A0A154PBS3	Protein piccolo.	Synaptotagmin-11.	0.551
WN55_05538	WN55_11127	A0A154PMK8	A0A154PDC4	Protein piccolo.	Peripheral plasma membrane protein CASK; Belongs to the MAGUK family.	0.999
WN55_07462	WN55_04022	A0A154PS67	A0A154PM06	Dystrophin, isoforms A/C/F/G/H.	Suppressor of lurcher protein 1.	0.578
WN55_07462	WN55_05408	A0A154PS67	A0A154P0D3	Dystrophin, isoforms A/C/F/G/H.	Dystrobrevin beta.	0.767
WN55_08356	WN55_05538	A0A154P8B2	A0A154PMK8	Synaptotagmin-12.	Protein piccolo.	0.551
WN55_08356	WN55_09682	A0A154P8B2	A0A154NZ39	Synaptotagmin-12.	Multiple C2 and transmembrane domain-containing protein 1.	0.590