13 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_05927	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1149 aa)
	WN55_05205	Protein Muted. (146 aa)
	WN55_04012	Fragile X mental retardation syndrome-related protein 1. (643 aa)
	WN55_03471	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (871 aa)
	WN55_03479	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family. (630 aa)
	WN55_03607	Liprin-alpha-2. (1387 aa)
	WN55_02970	Phosphatidylinositol-binding clathrin assembly protein LAP. (865 aa)
	WN55_01865	Biogenesis of lysosome-related organelles complex 1 subunit 1. (128 aa)
	WN55_07791	Protein cappuccino like protein. (156 aa)
	WN55_08199	Protein stoned-A. (912 aa)
	WN55_08198	Protein stoned-B; Belongs to the Stoned B family. (1227 aa)
	WN55_04648	Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family. (3569 aa)
	WN55_02687	Spatacsin. (1796 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_01865	WN55_05205	A0A154PEX8	A0A154PP65	Biogenesis of lysosome-related organelles complex 1 subunit 1.	Protein Muted.	0.835
WN55_01865	WN55_05927	A0A154PEX8	A0A154PPP9	Biogenesis of lysosome-related organelles complex 1 subunit 1.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.623
WN55_01865	WN55_07791	A0A154PEX8	A0A154P658	Biogenesis of lysosome-related organelles complex 1 subunit 1.	Protein cappuccino like protein.	0.935
WN55_02970	WN55_03471	A0A154PHP6	A0A154PJG1	Phosphatidylinositol-binding clathrin assembly protein LAP.	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.662
WN55_02970	WN55_05927	A0A154PHP6	A0A154PPP9	Phosphatidylinositol-binding clathrin assembly protein LAP.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.782
WN55_02970	WN55_08198	A0A154PHP6	A0A154P528	Phosphatidylinositol-binding clathrin assembly protein LAP.	Protein stoned-B; Belongs to the Stoned B family.	0.849
WN55_03471	WN55_02970	A0A154PJG1	A0A154PHP6	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Phosphatidylinositol-binding clathrin assembly protein LAP.	0.662
WN55_03471	WN55_05927	A0A154PJG1	A0A154PPP9	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.667
WN55_03479	WN55_03607	A0A154PJE5	A0A154PIS0	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family.	Liprin-alpha-2.	0.686
WN55_03607	WN55_03479	A0A154PIS0	A0A154PJE5	Liprin-alpha-2.	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family.	0.686
WN55_05205	WN55_01865	A0A154PP65	A0A154PEX8	Protein Muted.	Biogenesis of lysosome-related organelles complex 1 subunit 1.	0.835
WN55_05205	WN55_07791	A0A154PP65	A0A154P658	Protein Muted.	Protein cappuccino like protein.	0.664
WN55_05927	WN55_01865	A0A154PPP9	A0A154PEX8	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Biogenesis of lysosome-related organelles complex 1 subunit 1.	0.623
WN55_05927	WN55_02970	A0A154PPP9	A0A154PHP6	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Phosphatidylinositol-binding clathrin assembly protein LAP.	0.782
WN55_05927	WN55_03471	A0A154PPP9	A0A154PJG1	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.667
WN55_05927	WN55_07791	A0A154PPP9	A0A154P658	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Protein cappuccino like protein.	0.471
WN55_05927	WN55_08198	A0A154PPP9	A0A154P528	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	Protein stoned-B; Belongs to the Stoned B family.	0.730
WN55_07791	WN55_01865	A0A154P658	A0A154PEX8	Protein cappuccino like protein.	Biogenesis of lysosome-related organelles complex 1 subunit 1.	0.935
WN55_07791	WN55_05205	A0A154P658	A0A154PP65	Protein cappuccino like protein.	Protein Muted.	0.664
WN55_07791	WN55_05927	A0A154P658	A0A154PPP9	Protein cappuccino like protein.	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.	0.471