52 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_03008	Sorting nexin-30. (477 aa)
	WN55_07377	Tyrosine-protein phosphatase non-receptor type 23. (1458 aa)
	WN55_07883	UPF0505 protein C16orf62 like protein. (895 aa)
	WN55_07203	Glutamate receptor-interacting protein 2. (631 aa)
	WN55_06920	DENN domain-containing protein 1A. (927 aa)
	WN55_07410	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2438 aa)
	WN55_07303	Golgin subfamily A member 7. (140 aa)
	WN55_03045	Myotubularin-related protein 2. (653 aa)
	WN55_03409	Sorting nexin-12. (163 aa)
	WN55_03121	Sorting nexin-4. (389 aa)
	WN55_03196	Serine/threonine-protein kinase TBK1. (745 aa)
	WN55_03743	Syntaxin-binding protein 5. (1344 aa)
	WN55_03225	Rab11 family-interacting protein 4A. (518 aa)
	WN55_04332	Ras-like GTP-binding protein Rho1. (222 aa)
	WN55_06022	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded. (821 aa)
	WN55_05666	Ras-related protein Rab-35. (184 aa)
	WN55_05769	Golgin subfamily A member 4. (872 aa)
	WN55_06543	WAS protein family like protein 1. (465 aa)
	WN55_07256	Exocyst complex component 8. (713 aa)
	WN55_04232	Golgin-45. (437 aa)
	WN55_01237	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	WN55_02152	Exocyst complex component 1. (850 aa)
	WN55_09744	Exocyst complex component 4. (159 aa)
	WN55_05290	Ras-related protein Rab-8A. (209 aa)
	WN55_05862	ADP-ribosylation factor-related protein 1. (205 aa)
	WN55_04553	Vacuolar protein sorting-associated protein 18 like protein. (200 aa)
	WN55_04552	Vacuolar protein sorting-associated protein 18 like protein. (623 aa)
	WN55_09719	Vacuolar protein sorting-associated protein 26. (376 aa)
	WN55_05816	Ras-related protein Rab-14. (218 aa)
	WN55_07155	Ras-related protein Rab-7a. (207 aa)
	WN55_10341	EH domain-containing protein 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (538 aa)
	WN55_10268	ADP-ribosylation factor-binding protein GGA1. (656 aa)
	WN55_07747	MICAL-like protein 2. (1071 aa)
	WN55_08191	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (890 aa)
	WN55_08318	Protein wntless. (512 aa)
	WN55_07715	Vacuolar protein sorting-associated protein 52 like protein. (667 aa)
	WN55_08362	Myotubularin-related protein 13. (1993 aa)
	WN55_11258	Protein fat-free like protein. (664 aa)
	WN55_11316	Merlin. (603 aa)
	WN55_11449	Protein lap4. (1342 aa)
	WN55_11450	Protein lap4. (678 aa)
	WN55_11327	Brefeldin A-inhibited guanine nucleotide-exchange protein 2. (1643 aa)
	WN55_11337	Ras-related protein Rab-11A. (215 aa)
	WN55_11003	Vacuolar protein sorting-associated protein 53 like protein. (837 aa)
	WN55_11052	Coiled-coil domain-containing protein 93. (574 aa)
	WN55_01296	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (804 aa)
	WN55_01060	Protein expanded. (1404 aa)
	WN55_00530	Vacuolar protein sorting-associated protein 35. (806 aa)
	WN55_01005	Golgi phosphoprotein 3. (305 aa)
	WN55_00353	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (160 aa)
	WN55_02225	Vesicle-fusing ATPase 1; Belongs to the AAA ATPase family. (663 aa)
	WN55_02375	Exocyst complex component 5. (693 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_00353	WN55_05862	A0A154PFI5	A0A154P0J0	Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.	ADP-ribosylation factor-related protein 1.	0.862
WN55_00530	WN55_02375	A0A154PEM6	A0A154PHG7	Vacuolar protein sorting-associated protein 35.	Exocyst complex component 5.	0.497
WN55_00530	WN55_03008	A0A154PEM6	A0A154PHY3	Vacuolar protein sorting-associated protein 35.	Sorting nexin-30.	0.901
WN55_00530	WN55_03121	A0A154PEM6	A0A154PJI0	Vacuolar protein sorting-associated protein 35.	Sorting nexin-4.	0.905
WN55_00530	WN55_03409	A0A154PEM6	A0A154PJ85	Vacuolar protein sorting-associated protein 35.	Sorting nexin-12.	0.992
WN55_00530	WN55_05666	A0A154PEM6	A0A154PPG2	Vacuolar protein sorting-associated protein 35.	Ras-related protein Rab-35.	0.497
WN55_00530	WN55_05816	A0A154PEM6	A0A154P250	Vacuolar protein sorting-associated protein 35.	Ras-related protein Rab-14.	0.509
WN55_00530	WN55_06022	A0A154PEM6	A0A154PPD6	Vacuolar protein sorting-associated protein 35.	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded.	0.504
WN55_00530	WN55_06543	A0A154PEM6	A0A154PQ80	Vacuolar protein sorting-associated protein 35.	WAS protein family like protein 1.	0.613
WN55_00530	WN55_07155	A0A154PEM6	A0A154P2A3	Vacuolar protein sorting-associated protein 35.	Ras-related protein Rab-7a.	0.626
WN55_00530	WN55_08318	A0A154PEM6	A0A154P6P8	Vacuolar protein sorting-associated protein 35.	Protein wntless.	0.851
WN55_00530	WN55_09719	A0A154PEM6	A0A154P1A9	Vacuolar protein sorting-associated protein 35.	Vacuolar protein sorting-associated protein 26.	0.999
WN55_00530	WN55_11052	A0A154PEM6	A0A154PBU4	Vacuolar protein sorting-associated protein 35.	Coiled-coil domain-containing protein 93.	0.433
WN55_00530	WN55_11337	A0A154PEM6	A0A154PBP8	Vacuolar protein sorting-associated protein 35.	Ras-related protein Rab-11A.	0.654
WN55_01005	WN55_11337	A0A154PF86	A0A154PBP8	Golgi phosphoprotein 3.	Ras-related protein Rab-11A.	0.511
WN55_01060	WN55_11316	A0A154PE32	A0A154PAE3	Protein expanded.	Merlin.	0.871
WN55_01237	WN55_03196	A0A154NWE9	A0A154PJV7	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	Serine/threonine-protein kinase TBK1.	0.408
WN55_01237	WN55_07410	A0A154NWE9	A0A154PSI2	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.564
WN55_01296	WN55_02152	A0A154PCZ2	A0A154NXD1	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 1.	0.997
WN55_01296	WN55_02375	A0A154PCZ2	A0A154PHG7	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 5.	0.999