(13 nodes) GTP binding domain network (Dufourea novaeangliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_00325	Developmentally-regulated GTP-binding protein 2. (342 aa)
	WN55_02362	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (459 aa)
	WN55_03397	GTPase Era, mitochondrial. (343 aa)
	WN55_03528	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (639 aa)
	WN55_05676	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (327 aa)
	WN55_05136	GTP-binding protein 5. (619 aa)
	WN55_10794	Guanine nucleotide-binding protein-like 3 like protein. (574 aa)
	WN55_08049	Large subunit GTPase 1 like protein. (655 aa)
	WN55_10732	Actin, muscle. (603 aa)
	WN55_07777	Guanine nucleotide-binding protein-like 1. (577 aa)
	WN55_02011	Putative GTP-binding protein 6. (487 aa)
	WN55_10716	Nitric oxide-associated protein 1. (742 aa)
	WN55_03840	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (683 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_02011	WN55_02362	A0A154NWQ6	A0A154PHD3	Putative GTP-binding protein 6.	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.614
WN55_02011	WN55_03397	A0A154NWQ6	A0A154PJB0	Putative GTP-binding protein 6.	GTPase Era, mitochondrial.	0.609
WN55_02011	WN55_05136	A0A154NWQ6	A0A154PQD5	Putative GTP-binding protein 6.	GTP-binding protein 5.	0.675
WN55_02362	WN55_02011	A0A154PHD3	A0A154NWQ6	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Putative GTP-binding protein 6.	0.614
WN55_02362	WN55_03397	A0A154PHD3	A0A154PJB0	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	GTPase Era, mitochondrial.	0.792
WN55_02362	WN55_03840	A0A154PHD3	A0A154NWH9	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.636
WN55_02362	WN55_05136	A0A154PHD3	A0A154PQD5	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	GTP-binding protein 5.	0.692
WN55_02362	WN55_05676	A0A154PHD3	A0A154PPH2	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.931
WN55_02362	WN55_07777	A0A154PHD3	A0A154P4L1	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Guanine nucleotide-binding protein-like 1.	0.636
WN55_02362	WN55_08049	A0A154PHD3	A0A154P928	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Large subunit GTPase 1 like protein.	0.636
WN55_02362	WN55_10716	A0A154PHD3	A0A154PBB9	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Nitric oxide-associated protein 1.	0.647
WN55_02362	WN55_10794	A0A154PHD3	A0A154PAA4	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Guanine nucleotide-binding protein-like 3 like protein.	0.636
WN55_03397	WN55_02011	A0A154PJB0	A0A154NWQ6	GTPase Era, mitochondrial.	Putative GTP-binding protein 6.	0.609
WN55_03397	WN55_02362	A0A154PJB0	A0A154PHD3	GTPase Era, mitochondrial.	tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.792
WN55_03397	WN55_03840	A0A154PJB0	A0A154NWH9	GTPase Era, mitochondrial.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.556
WN55_03397	WN55_05136	A0A154PJB0	A0A154PQD5	GTPase Era, mitochondrial.	GTP-binding protein 5.	0.699
WN55_03397	WN55_05676	A0A154PJB0	A0A154PPH2	GTPase Era, mitochondrial.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.733
WN55_03397	WN55_07777	A0A154PJB0	A0A154P4L1	GTPase Era, mitochondrial.	Guanine nucleotide-binding protein-like 1.	0.556
WN55_03397	WN55_08049	A0A154PJB0	A0A154P928	GTPase Era, mitochondrial.	Large subunit GTPase 1 like protein.	0.556
WN55_03397	WN55_10716	A0A154PJB0	A0A154PBB9	GTPase Era, mitochondrial.	Nitric oxide-associated protein 1.	0.908