STRINGSTRING
WN55_03879 WN55_03879 WN55_01246 WN55_01246 WN55_00098 WN55_00098 WN55_02699 WN55_02699 WN55_05399 WN55_05399 WN55_04580 WN55_04580 WN55_07524 WN55_07524 WN55_05262 WN55_05262 WN55_07110 WN55_07110 WN55_05123 WN55_05123 WN55_03088 WN55_03088 WN55_01858 WN55_01858 WN55_01159 WN55_01159 WN55_11089 WN55_11089 WN55_11342 WN55_11342
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
WN55_03879Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (500 aa)
WN55_01246AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (156 aa)
WN55_00098AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (417 aa)
WN55_02699Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (221 aa)
WN55_05399Putative trafficking protein particle complex subunit 2. (140 aa)
WN55_04580Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (201 aa)
WN55_07524Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (151 aa)
WN55_05262Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (217 aa)
WN55_07110AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (422 aa)
WN55_05123Signal recognition particle receptor subunit alpha. (619 aa)
WN55_03088Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (213 aa)
WN55_01858AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family. (471 aa)
WN55_01159Trafficking protein particle complex subunit 2-like protein. (138 aa)
WN55_11089AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (122 aa)
WN55_11342Synaptobrevin like protein YKT6; Belongs to the synaptobrevin family. (200 aa)
Your Current Organism:
Dufourea novaeangliae
NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae
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