53 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_10811	Sorting nexin; Involved in several stages of intracellular trafficking. (408 aa)
	WN55_04227	Early activation antigen CD69. (321 aa)
	WN55_01245	Protein TBRG4. (466 aa)
	WN55_01246	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (156 aa)
	WN55_03837	Endophilin-A. (377 aa)
	WN55_09585	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	WN55_02699	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (221 aa)
	WN55_08806	Tumor protein D54. (541 aa)
	WN55_05807	Type II inositol 1,4,5-trisphosphate 5-phosphatase. (844 aa)
	WN55_05861	AP-1 complex subunit gamma. (802 aa)
	WN55_04776	Synaptobrevin. (122 aa)
	WN55_08644	Maternal protein pumilio. (1356 aa)
	WN55_07110	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (422 aa)
	WN55_10576	Sorting nexin-2. (511 aa)
	WN55_08965	Uncharacterized protein. (229 aa)
	WN55_07791	Protein cappuccino like protein. (156 aa)
	WN55_08361	AP-2 complex subunit beta. (835 aa)
	WN55_08284	Targeting protein for Xklp2. (323 aa)
	WN55_08032	Thioredoxin domain-containing protein. (296 aa)
	WN55_08376	Carboxypeptidase M. (438 aa)
	WN55_09274	SNARE-associated protein Snapin. (159 aa)
	WN55_00911	Targeting protein for Xklp2. (756 aa)
	WN55_00927	Cyclin-G-associated kinase. (1133 aa)
	WN55_00258	Extracellular sulfatase SULF-1 like protein. (1410 aa)
	WN55_01082	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (220 aa)
	WN55_01372	ADP-ribosylation factor-like protein 5B; Belongs to the small GTPase superfamily. Arf family. (161 aa)
	WN55_00470	Uncharacterized protein. (1003 aa)
	WN55_01865	Biogenesis of lysosome-related organelles complex 1 subunit 1. (128 aa)
	WN55_01071	Carboxypeptidase D. (1374 aa)
	WN55_02292	Charged multivesicular body protein 2a. (227 aa)
	WN55_02470	Phosrestin-2. (376 aa)
	WN55_02970	Phosphatidylinositol-binding clathrin assembly protein LAP. (865 aa)
	WN55_03044	Phosrestin-1. (541 aa)
	WN55_03617	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1. (1698 aa)
	WN55_03609	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis. (155 aa)
	WN55_03471	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (871 aa)
	WN55_03198	Metastasis suppressor protein 1. (905 aa)
	WN55_04290	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1647 aa)
	WN55_05008	Protein TMED8. (465 aa)
	WN55_04438	Clavesin-2. (308 aa)
	WN55_05218	Beta-arrestin-1. (463 aa)
	WN55_05590	Plancitoxin-1. (376 aa)
	WN55_06010	Pallidin. (155 aa)
	WN55_06022	Hepatocyte growth factor-regulated tyrosine kinase substrate; Essential role in endosome membrane invagination and formation of multivesicular bodies, MVBs. Required during gastrulation and appears to regulate early embryonic signaling pathways. Inhibits tyrosine kinase receptor signaling by promoting degradation of the tyrosine-phosphorylated, active receptor, potentially by sorting activated receptors into MVBs. The MVBs are then trafficked to the lysosome where their contents are degraded. (821 aa)
	WN55_05706	ADP-ribosylation factor 2; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	WN55_06525	Protein YIPF. (214 aa)
	WN55_05646	TBC1 domain family member 9. (1131 aa)
	WN55_06298	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A. (852 aa)
	WN55_06330	Radial spoke head protein 9 like protein. (350 aa)
	WN55_06301	N-acetylglucosamine-6-sulfatase. (497 aa)
	WN55_07492	Arrestin like protein. (406 aa)
	WN55_06642	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta; Belongs to the PI3/PI4-kinase family. (1767 aa)
	WN55_06955	Zinc finger FYVE domain-containing protein 1. (675 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_00258	WN55_00470	A0A154PCF9	A0A154PEH3	Extracellular sulfatase SULF-1 like protein.	Uncharacterized protein.	0.540
WN55_00258	WN55_00927	A0A154PCF9	A0A154PBG7	Extracellular sulfatase SULF-1 like protein.	Cyclin-G-associated kinase.	0.682
WN55_00258	WN55_01245	A0A154PCF9	A0A154NWB7	Extracellular sulfatase SULF-1 like protein.	Protein TBRG4.	0.575
WN55_00258	WN55_01246	A0A154PCF9	A0A154NWD7	Extracellular sulfatase SULF-1 like protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.575
WN55_00258	WN55_01372	A0A154PCF9	A0A154PEF9	Extracellular sulfatase SULF-1 like protein.	ADP-ribosylation factor-like protein 5B; Belongs to the small GTPase superfamily. Arf family.	0.523
WN55_00258	WN55_05590	A0A154PCF9	A0A154PPA5	Extracellular sulfatase SULF-1 like protein.	Plancitoxin-1.	0.613
WN55_00258	WN55_05706	A0A154PCF9	A0A154PPJ6	Extracellular sulfatase SULF-1 like protein.	ADP-ribosylation factor 2; Belongs to the small GTPase superfamily. Arf family.	0.523
WN55_00258	WN55_05861	A0A154PCF9	A0A154P0G4	Extracellular sulfatase SULF-1 like protein.	AP-1 complex subunit gamma.	0.606
WN55_00258	WN55_08032	A0A154PCF9	A0A154P768	Extracellular sulfatase SULF-1 like protein.	Thioredoxin domain-containing protein.	0.555
WN55_00258	WN55_08361	A0A154PCF9	A0A154P6N7	Extracellular sulfatase SULF-1 like protein.	AP-2 complex subunit beta.	0.568
WN55_00258	WN55_09585	A0A154PCF9	A0A154NYP0	Extracellular sulfatase SULF-1 like protein.	ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.	0.523
WN55_00470	WN55_00258	A0A154PEH3	A0A154PCF9	Uncharacterized protein.	Extracellular sulfatase SULF-1 like protein.	0.540
WN55_00470	WN55_00927	A0A154PEH3	A0A154PBG7	Uncharacterized protein.	Cyclin-G-associated kinase.	0.995
WN55_00470	WN55_01082	A0A154PEH3	A0A154PDY8	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.609
WN55_00470	WN55_01372	A0A154PEH3	A0A154PEF9	Uncharacterized protein.	ADP-ribosylation factor-like protein 5B; Belongs to the small GTPase superfamily. Arf family.	0.599
WN55_00470	WN55_02699	A0A154PEH3	A0A154NZA9	Uncharacterized protein.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.556
WN55_00470	WN55_02970	A0A154PEH3	A0A154PHP6	Uncharacterized protein.	Phosphatidylinositol-binding clathrin assembly protein LAP.	0.527
WN55_00470	WN55_03471	A0A154PEH3	A0A154PJG1	Uncharacterized protein.	Dynamin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.578
WN55_00470	WN55_03609	A0A154PEH3	A0A154PIZ0	Uncharacterized protein.	Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.	0.550
WN55_00470	WN55_04290	A0A154PEH3	A0A154PLM2	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.602