17 items (Dufourea novaeangliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WN55_10972	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (646 aa)
	WN55_01305	Putative methyltransferase 235L. (280 aa)
	WN55_01758	Synaptotagmin 1. (418 aa)
	WN55_08666	Succinate-semialdehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family. (485 aa)
	WN55_04776	Synaptobrevin. (122 aa)
	WN55_04678	Coiled-coil domain-containing protein 37. (604 aa)
	WN55_10277	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (276 aa)
	WN55_08214	Syntaxin-1A; Belongs to the syntaxin family. (470 aa)
	WN55_07884	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (399 aa)
	WN55_05607	Syntaxin-1B. (196 aa)
	WN55_03479	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family. (630 aa)
	WN55_02941	Cysteine string protein. (237 aa)
	WN55_02218	Proton-coupled amino acid transporter 3. (547 aa)
	WN55_01481	Sodium-and chloride-dependent GABA transporter 1. (475 aa)
	WN55_09074	Vesicular inhibitory amino acid transporter. (531 aa)
	WN55_00264	Regulating synaptic membrane exocytosis protein 2. (1985 aa)
	WN55_00828	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (493 aa)

Your Current Organism:

Dufourea novaeangliae

NCBI taxonomy Id: 178035
Other names: D. novaeangliae, Dufourea nova-angliae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WN55_00264	WN55_01305	A0A154PCL9	A0A154PEC6	Regulating synaptic membrane exocytosis protein 2.	Putative methyltransferase 235L.	0.991
WN55_00264	WN55_01758	A0A154PCL9	A0A154NW04	Regulating synaptic membrane exocytosis protein 2.	Synaptotagmin 1.	0.727
WN55_00264	WN55_02218	A0A154PCL9	A0A154PHQ6	Regulating synaptic membrane exocytosis protein 2.	Proton-coupled amino acid transporter 3.	0.607
WN55_00264	WN55_02941	A0A154PCL9	A0A154PIJ0	Regulating synaptic membrane exocytosis protein 2.	Cysteine string protein.	0.979
WN55_00264	WN55_03479	A0A154PCL9	A0A154PJE5	Regulating synaptic membrane exocytosis protein 2.	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family.	0.999
WN55_00264	WN55_04776	A0A154PCL9	A0A154P1M7	Regulating synaptic membrane exocytosis protein 2.	Synaptobrevin.	0.973
WN55_00264	WN55_05607	A0A154PCL9	A0A154PN50	Regulating synaptic membrane exocytosis protein 2.	Syntaxin-1B.	0.999
WN55_00264	WN55_08214	A0A154PCL9	A0A154P512	Regulating synaptic membrane exocytosis protein 2.	Syntaxin-1A; Belongs to the syntaxin family.	0.999
WN55_00264	WN55_09074	A0A154PCL9	A0A154P838	Regulating synaptic membrane exocytosis protein 2.	Vesicular inhibitory amino acid transporter.	0.985
WN55_00264	WN55_10277	A0A154PCL9	A0A154P3E2	Regulating synaptic membrane exocytosis protein 2.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.970
WN55_00828	WN55_08666	A0A154PE45	A0A154NZM2	4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.890
WN55_01305	WN55_00264	A0A154PEC6	A0A154PCL9	Putative methyltransferase 235L.	Regulating synaptic membrane exocytosis protein 2.	0.991
WN55_01305	WN55_01758	A0A154PEC6	A0A154NW04	Putative methyltransferase 235L.	Synaptotagmin 1.	0.923
WN55_01305	WN55_02218	A0A154PEC6	A0A154PHQ6	Putative methyltransferase 235L.	Proton-coupled amino acid transporter 3.	0.542
WN55_01305	WN55_02941	A0A154PEC6	A0A154PIJ0	Putative methyltransferase 235L.	Cysteine string protein.	0.827
WN55_01305	WN55_03479	A0A154PEC6	A0A154PJE5	Putative methyltransferase 235L.	Protein ROP; Belongs to the STXBP/unc-18/SEC1 family.	0.839
WN55_01305	WN55_04776	A0A154PEC6	A0A154P1M7	Putative methyltransferase 235L.	Synaptobrevin.	0.846
WN55_01305	WN55_05607	A0A154PEC6	A0A154PN50	Putative methyltransferase 235L.	Syntaxin-1B.	0.709
WN55_01305	WN55_08214	A0A154PEC6	A0A154P512	Putative methyltransferase 235L.	Syntaxin-1A; Belongs to the syntaxin family.	0.709
WN55_01305	WN55_09074	A0A154PEC6	A0A154P838	Putative methyltransferase 235L.	Vesicular inhibitory amino acid transporter.	0.768