(25 nodes) Mixed, incl. ThuA-like domain, and Streptomycin biosynthesis network (Streptomyces qaidamensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMW10258.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
	AMW10259.1	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)
	AMW10260.1	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	AMW11446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AMW11569.1	Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AMW12131.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (288 aa)
	AMW13377.1	Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily. (271 aa)
	AMW13630.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	AMW13631.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	AMW13632.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	AMW13840.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AMW13841.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AMW13842.1	Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AMW13843.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	AMW13844.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AMW14030.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1240 aa)
	AMW14031.1	Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	A4E84_33805	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	AMW14033.1	Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AMW14034.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	AMW14035.1	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)
	AMW14036.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AMW15624.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (714 aa)
	AMW14154.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
	AMW14155.1	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)

Your Current Organism:

Streptomyces qaidamensis

NCBI taxonomy Id: 1783515
Other names: CGMCC 4.7315, JCM 31184, S. qaidamensis, Streptomyces sp. S10(2016), strain S10

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4E84_33805	AMW10259.1	A4E84_33805	A4E84_12495	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
A4E84_33805	AMW13631.1	A4E84_33805	A4E84_31460	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
A4E84_33805	AMW13840.1	A4E84_33805	A4E84_32675	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
A4E84_33805	AMW13841.1	A4E84_33805	A4E84_32680	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
A4E84_33805	AMW13842.1	A4E84_33805	A4E84_32685	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
A4E84_33805	AMW13844.1	A4E84_33805	A4E84_32695	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
A4E84_33805	AMW14030.1	A4E84_33805	A4E84_33785	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
A4E84_33805	AMW14031.1	A4E84_33805	A4E84_33790	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Myo-inositol-1-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
A4E84_33805	AMW14033.1	A4E84_33805	A4E84_33810	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
A4E84_33805	AMW14034.1	A4E84_33805	A4E84_33815	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
A4E84_33805	AMW14035.1	A4E84_33805	A4E84_33820	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
A4E84_33805	AMW14036.1	A4E84_33805	A4E84_33825	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
A4E84_33805	AMW14154.1	A4E84_33805	A4E84_34495	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
A4E84_33805	AMW14155.1	A4E84_33805	A4E84_34500	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
A4E84_33805	AMW15624.1	A4E84_33805	A4E84_34490	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AMW10258.1	AMW10259.1	A4E84_12490	A4E84_12495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AMW10258.1	AMW10260.1	A4E84_12490	A4E84_12500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
AMW10259.1	A4E84_33805	A4E84_12495	A4E84_33805	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AMW10259.1	AMW10258.1	A4E84_12495	A4E84_12490	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AMW10259.1	AMW10260.1	A4E84_12495	A4E84_12500	Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788