(6 nodes) Mixed, incl. Mycobacterial 4 TMS phage holin, superfamily IV, and DedA family network (Streptomyces qaidamensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMW15604.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AMW13987.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AMW13988.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	AMW13989.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (674 aa)
	AMW13992.1	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AMW13993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)

Your Current Organism:

Streptomyces qaidamensis

NCBI taxonomy Id: 1783515
Other names: CGMCC 4.7315, JCM 31184, S. qaidamensis, Streptomyces sp. S10(2016), strain S10

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMW13987.1	AMW13988.1	A4E84_33540	A4E84_33545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AMW13987.1	AMW13989.1	A4E84_33540	A4E84_33550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AMW13987.1	AMW13992.1	A4E84_33540	A4E84_33565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
AMW13987.1	AMW15604.1	A4E84_33540	A4E84_33535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AMW13988.1	AMW13987.1	A4E84_33545	A4E84_33540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AMW13988.1	AMW13989.1	A4E84_33545	A4E84_33550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AMW13988.1	AMW13992.1	A4E84_33545	A4E84_33565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AMW13988.1	AMW15604.1	A4E84_33545	A4E84_33535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AMW13989.1	AMW13987.1	A4E84_33550	A4E84_33540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AMW13989.1	AMW13988.1	A4E84_33550	A4E84_33545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AMW13989.1	AMW13992.1	A4E84_33550	A4E84_33565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AMW13989.1	AMW13993.1	A4E84_33550	A4E84_33570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AMW13989.1	AMW15604.1	A4E84_33550	A4E84_33535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AMW13992.1	AMW13987.1	A4E84_33565	A4E84_33540	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
AMW13992.1	AMW13988.1	A4E84_33565	A4E84_33545	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
AMW13992.1	AMW13989.1	A4E84_33565	A4E84_33550	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AMW13992.1	AMW13993.1	A4E84_33565	A4E84_33570	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AMW13992.1	AMW15604.1	A4E84_33565	A4E84_33535	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AMW13993.1	AMW13989.1	A4E84_33570	A4E84_33550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
AMW13993.1	AMW13992.1	A4E84_33570	A4E84_33565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755