STRINGSTRING
pdxH pdxH ydbC_1 ydbC_1 GCA_001049355_04919 GCA_001049355_04919 GCA_001049355_04920 GCA_001049355_04920 thrS thrS GCA_001049355_04922 GCA_001049355_04922 GCA_001049355_04924 GCA_001049355_04924 pimA pimA GCA_001049355_04926 GCA_001049355_04926 pdxS pdxS pdxT pdxT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pdxHUnannotated protein; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). (207 aa)
ydbC_1Unannotated protein. (280 aa)
GCA_001049355_04919Unannotated protein. (209 aa)
GCA_001049355_04920Unannotated protein. (142 aa)
thrSUnannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (694 aa)
GCA_001049355_04922Unannotated protein. (182 aa)
GCA_001049355_04924Unannotated protein. (318 aa)
pimAUnannotated protein. (376 aa)
GCA_001049355_04926Unannotated protein. (347 aa)
pdxSUnannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (305 aa)
pdxTUnannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (189 aa)
Your Current Organism:
Mycolicibacterium aurum
NCBI taxonomy Id: 1791
Other names: ATCC 23366, CCUG 37666, CIP 104465, DSM 43999, HAMBI 2275, JCM 6366, LMG 19255, LMG:19255, M. aurum, Mycobacterium aurum, NCTC 10437, NRRL B-4037
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