STRINGSTRING
dat dat metB_1 metB_1 nifS nifS ydcR ydcR pat pat GCA_001049355_00821 GCA_001049355_00821 gabR gabR tpa tpa gcvP gcvP argD argD csd csd hemL2 hemL2 GCA_001049355_02508 GCA_001049355_02508 serC serC hemL1 hemL1 metZ metZ dapL dapL dapC dapC hisC hisC bioF bioF bioA bioA egtE egtE ltaE ltaE yjiR yjiR aspC aspC ddc ddc gabT gabT patA patA GCA_001049355_05357 GCA_001049355_05357 glyA glyA dgdA_2 dgdA_2 dgdA_1 dgdA_1 metB_2 metB_2 rocD2 rocD2 gadB gadB mdeA mdeA bioK bioK lat lat
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
datUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)
metB_1Unannotated protein. (370 aa)
nifSUnannotated protein. (401 aa)
ydcRUnannotated protein. (480 aa)
patUnannotated protein; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (355 aa)
GCA_001049355_00821Unannotated protein. (398 aa)
gabRUnannotated protein. (473 aa)
tpaUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)
gcvPUnannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (952 aa)
argDUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (392 aa)
csdUnannotated protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (414 aa)
hemL2Unannotated protein. (432 aa)
GCA_001049355_02508Unannotated protein. (421 aa)
serCUnannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (373 aa)
hemL1Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)
metZUnannotated protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (407 aa)
dapLUnannotated protein. (357 aa)
dapCUnannotated protein. (391 aa)
hisCUnannotated protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (371 aa)
bioFUnannotated protein. (379 aa)
bioAUnannotated protein; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (465 aa)
egtEUnannotated protein. (365 aa)
ltaEUnannotated protein. (342 aa)
yjiRUnannotated protein. (449 aa)
aspCUnannotated protein. (384 aa)
ddcUnannotated protein. (471 aa)
gabTUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)
patAUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (426 aa)
GCA_001049355_05357Unannotated protein. (432 aa)
glyAUnannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (487 aa)
dgdA_2Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)
dgdA_1Unannotated protein. (979 aa)
metB_2Unannotated protein. (393 aa)
rocD2Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (410 aa)
gadBUnannotated protein; Belongs to the group II decarboxylase family. (464 aa)
mdeAUnannotated protein. (447 aa)
bioKUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (462 aa)
latUnannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (452 aa)
Your Current Organism:
Mycolicibacterium aurum
NCBI taxonomy Id: 1791
Other names: ATCC 23366, CCUG 37666, CIP 104465, DSM 43999, HAMBI 2275, JCM 6366, LMG 19255, LMG:19255, M. aurum, Mycobacterium aurum, NCTC 10437, NRRL B-4037
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.