(8 nodes) Mixed, incl. Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead, and Prosthetic group metabolic process network (Yangia sp. CCBMM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANT59018.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
	ANT59019.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	ANT59020.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	ANT59021.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	ANT59272.1	Molybdopterin molybdochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	ANT59398.1	Molybdopterin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	ANT59399.1	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	ANT60722.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)

Your Current Organism:

Yangia sp. CCBMM3

NCBI taxonomy Id: 1792508
Other names: Y. sp. CCB-MM3, Yangia sp. CCB-MM3

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANT59018.1	ANT59019.1	AYJ57_00755	AYJ57_00760	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANT59018.1	ANT59020.1	AYJ57_00755	AYJ57_00765	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
ANT59018.1	ANT59021.1	AYJ57_00755	AYJ57_00770	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
ANT59018.1	ANT59272.1	AYJ57_00755	AYJ57_02180	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin molybdochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
ANT59018.1	ANT59398.1	AYJ57_00755	AYJ57_02890	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
ANT59018.1	ANT59399.1	AYJ57_00755	AYJ57_02895	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ANT59018.1	ANT60722.1	AYJ57_00755	AYJ57_10305	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
ANT59019.1	ANT59018.1	AYJ57_00760	AYJ57_00755	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
ANT59019.1	ANT59020.1	AYJ57_00760	AYJ57_00765	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ANT59019.1	ANT59021.1	AYJ57_00760	AYJ57_00770	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ANT59019.1	ANT59272.1	AYJ57_00760	AYJ57_02180	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin molybdochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ANT59019.1	ANT59399.1	AYJ57_00760	AYJ57_02895	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
ANT59019.1	ANT60722.1	AYJ57_00760	AYJ57_10305	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANT59020.1	ANT59018.1	AYJ57_00765	AYJ57_00755	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
ANT59020.1	ANT59019.1	AYJ57_00765	AYJ57_00760	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ANT59020.1	ANT59021.1	AYJ57_00765	AYJ57_00770	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ANT59020.1	ANT59272.1	AYJ57_00765	AYJ57_02180	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin molybdochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
ANT59020.1	ANT59398.1	AYJ57_00765	AYJ57_02890	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
ANT59020.1	ANT59399.1	AYJ57_00765	AYJ57_02895	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
ANT59021.1	ANT59018.1	AYJ57_00770	AYJ57_00755	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886