(29 nodes) ABC-type polyamine transporter activity, and Polyamine binding network (Yangia sp. CCBMM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANT59743.1	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	ANT59744.1	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
	ANT59745.1	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (367 aa)
	ANT60054.1	ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (341 aa)
	ANT61479.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	ANT60055.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	potA-2	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (361 aa)
	ANT60368.1	Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (361 aa)
	potA-3	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (373 aa)
	ANT60370.1	Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANT60371.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	ANT60372.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	AYJ57_13915	Oxidoreductase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	ANT62732.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	ANT61592.1	Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	potA-4	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (377 aa)
	ANT61874.1	Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (339 aa)
	ANT61875.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	ANT61876.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	potA-5	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (357 aa)
	ANT62308.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	ANT62310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (217 aa)
	ANT62567.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	ANT62568.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	ANT62569.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	ANT62836.1	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	ANT62570.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	ANT62571.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (296 aa)

Your Current Organism:

Yangia sp. CCBMM3

NCBI taxonomy Id: 1792508
Other names: Y. sp. CCB-MM3, Yangia sp. CCB-MM3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANT59743.1	ANT59744.1	AYJ57_04760	AYJ57_04765	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANT59743.1	ANT59745.1	AYJ57_04760	AYJ57_04770	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
ANT59743.1	ANT60054.1	AYJ57_04760	AYJ57_06555	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.644
ANT59743.1	ANT60055.1	AYJ57_04760	AYJ57_06565	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
ANT59743.1	ANT60368.1	AYJ57_04760	AYJ57_08375	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.571
ANT59743.1	ANT60370.1	AYJ57_04760	AYJ57_08385	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putrescine/spermidine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
ANT59743.1	ANT61592.1	AYJ57_04760	AYJ57_13925	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter Trk; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ANT59743.1	ANT61874.1	AYJ57_04760	AYJ57_15550	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.557
ANT59743.1	ANT61876.1	AYJ57_04760	AYJ57_15560	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
ANT59743.1	ANT62310.1	AYJ57_04760	AYJ57_17980	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.565
ANT59743.1	ANT62569.1	AYJ57_04760	AYJ57_19470	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ANT59743.1	ANT62570.1	AYJ57_04760	AYJ57_19480	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
ANT59743.1	ANT62732.1	AYJ57_04760	AYJ57_13920	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
ANT59743.1	potA	AYJ57_04760	AYJ57_04775	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.894
ANT59743.1	potA-2	AYJ57_04760	AYJ57_06570	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.508
ANT59743.1	potA-3	AYJ57_04760	AYJ57_08380	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.524
ANT59743.1	potA-4	AYJ57_04760	AYJ57_13930	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.508
ANT59743.1	potA-5	AYJ57_04760	AYJ57_15565	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.495
ANT59744.1	ANT59743.1	AYJ57_04765	AYJ57_04760	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANT59744.1	ANT59745.1	AYJ57_04765	AYJ57_04770	Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927