(10 nodes) Mixed, incl. Xylulokinase, and Fructokinase activity network (Yangia sp. CCBMM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	xylB	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	ANT59162.1	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family. (492 aa)
	ANT59163.1	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ANT59164.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (334 aa)
	ANT59165.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ANT59166.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	ANT59167.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	ANT59979.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	ANT60219.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	xylB-2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (480 aa)

Your Current Organism:

Yangia sp. CCBMM3

NCBI taxonomy Id: 1792508
Other names: Y. sp. CCB-MM3, Yangia sp. CCB-MM3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANT59162.1	ANT59163.1	AYJ57_01590	AYJ57_01595	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
ANT59162.1	ANT59164.1	AYJ57_01590	AYJ57_01600	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.839
ANT59162.1	ANT59165.1	AYJ57_01590	AYJ57_01605	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
ANT59162.1	ANT59166.1	AYJ57_01590	AYJ57_01610	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
ANT59162.1	ANT59167.1	AYJ57_01590	AYJ57_01615	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
ANT59162.1	ANT59979.1	AYJ57_01590	AYJ57_06125	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
ANT59162.1	xylB	AYJ57_01590	AYJ57_01585	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
ANT59162.1	xylB-2	AYJ57_01590	AYJ57_14715	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
ANT59163.1	ANT59162.1	AYJ57_01595	AYJ57_01590	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	0.889
ANT59163.1	ANT59164.1	AYJ57_01595	AYJ57_01600	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.810
ANT59163.1	ANT59165.1	AYJ57_01595	AYJ57_01605	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
ANT59163.1	ANT59166.1	AYJ57_01595	AYJ57_01610	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
ANT59163.1	ANT59167.1	AYJ57_01595	AYJ57_01615	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
ANT59163.1	xylB	AYJ57_01595	AYJ57_01585	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
ANT59164.1	ANT59162.1	AYJ57_01600	AYJ57_01590	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Mannitol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannitol dehydrogenase family.	0.839
ANT59164.1	ANT59163.1	AYJ57_01600	AYJ57_01595	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Converts D-sorbitol to L-sorbose; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
ANT59164.1	ANT59165.1	AYJ57_01600	AYJ57_01605	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ANT59164.1	ANT59166.1	AYJ57_01600	AYJ57_01610	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ANT59164.1	ANT59167.1	AYJ57_01600	AYJ57_01615	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ANT59164.1	xylB	AYJ57_01600	AYJ57_01585	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770