STRINGSTRING
ANT59017.1 ANT59017.1 ANT59021.1 ANT59021.1 ANT59078.1 ANT59078.1 kynU kynU ANT59230.1 ANT59230.1 ANT59306.1 ANT59306.1 ANT59384.1 ANT59384.1 ANT59399.1 ANT59399.1 ANT59445.1 ANT59445.1 ANT61417.1 ANT61417.1 ANT59527.1 ANT59527.1 ANT59570.1 ANT59570.1 ureC ureC ureB ureB ureA ureA deoD deoD xseB xseB pnp pnp ANT59774.1 ANT59774.1 ANT59843.1 ANT59843.1 ANT59863.1 ANT59863.1 ANT59865.1 ANT59865.1 ANT59869.1 ANT59869.1 ANT59879.1 ANT59879.1 rutC rutC ANT59881.1 ANT59881.1 rutA rutA rnhB rnhB dut dut ANT59929.1 ANT59929.1 ANT59930.1 ANT59930.1 ANT59958.1 ANT59958.1 ANT59960.1 ANT59960.1 ANT60152.1 ANT60152.1 ANT61495.1 ANT61495.1 ANT60221.1 ANT60221.1 rph rph ANT60252.1 ANT60252.1 rnhA rnhA ade ade ANT60450.1 ANT60450.1 ANT60688.1 ANT60688.1 ANT60689.1 ANT60689.1 rutA-2 rutA-2 ANT60696.1 ANT60696.1 ANT60725.1 ANT60725.1 ANT60888.1 ANT60888.1 ANT60908.1 ANT60908.1 ANT60917.1 ANT60917.1 ANT60920.1 ANT60920.1 xseA xseA surE surE ANT61048.1 ANT61048.1 ANT61338.1 ANT61338.1 ANT61344.1 ANT61344.1 ANT61705.1 ANT61705.1 ANT61736.1 ANT61736.1 cpdB cpdB ANT61739.1 ANT61739.1 ANT61835.1 ANT61835.1 ANT61873.1 ANT61873.1 ANT61943.1 ANT61943.1 ANT61959.1 ANT61959.1 ANT61961.1 ANT61961.1 allA allA ANT62005.1 ANT62005.1 ANT62011.1 ANT62011.1 ANT62022.1 ANT62022.1 ANT62782.1 ANT62782.1 ANT62137.1 ANT62137.1 deoB deoB ANT62140.1 ANT62140.1 ANT62185.1 ANT62185.1 ANT62263.1 ANT62263.1 ANT62278.1 ANT62278.1 ANT62320.1 ANT62320.1 ANT62348.1 ANT62348.1 ANT62486.1 ANT62486.1 ANT62495.1 ANT62495.1 ANT62522.1 ANT62522.1 ade-2 ade-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ANT59017.1Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family. (350 aa)
ANT59021.1Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
ANT59078.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (402 aa)
ANT59230.1Thiosulfohydrolase SoxB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (565 aa)
ANT59306.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (453 aa)
ANT59384.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (502 aa)
ANT59399.1XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
ANT59445.1Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
ANT61417.1Phosphonate metabolism protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
ANT59527.1Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
ANT59570.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
ureCUrease subunit alpha; Ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
ureBUrease subunit beta; Ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem [...] (101 aa)
ureAUrease subunit gamma; UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family. (100 aa)
deoDPurine nucleoside phosphorylase DeoD-type; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (713 aa)
ANT59774.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
ANT59843.1Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
ANT59863.12-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. (330 aa)
ANT59865.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
ANT59869.1Ureidoglycolate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
ANT59879.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
rutCPyrimidine utilization protein C; May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation. (127 aa)
ANT59881.1Pyrimidine utilization protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
rutAPyrimidine utilization protein A; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate. (361 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (209 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (151 aa)
ANT59929.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
ANT59930.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
ANT59958.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
ANT59960.13-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
ANT60152.1Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
ANT61495.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
ANT60221.1Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family. (332 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (236 aa)
ANT60252.1Non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (207 aa)
rnhARibonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (150 aa)
adeAdenine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (565 aa)
ANT60450.1Deoxyguanosinetriphosphate triphosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
ANT60688.1Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
ANT60689.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
rutA-2Pyrimidine utilization protein A; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate. (359 aa)
ANT60696.1Nitroreductase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
ANT60725.1Multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (519 aa)
ANT60888.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family. (581 aa)
ANT60908.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
ANT60917.1Hydroxydechloroatrazine ethylaminohydrolase; Catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
ANT60920.1Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (429 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (504 aa)
surEStationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (261 aa)
ANT61048.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (189 aa)
ANT61338.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
ANT61344.1Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
ANT61705.1Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
ANT61736.1NADH pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
cpdB2',3'-cyclic-nucleotide 2'-phosphodiesterase; Periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (658 aa)
ANT61739.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
ANT61835.1Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
ANT61873.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (559 aa)
ANT61943.1Class III aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
ANT61959.1Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
ANT61961.1Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (445 aa)
allAUreidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source. (162 aa)
ANT62005.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (317 aa)
ANT62011.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (614 aa)
ANT62022.1Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
ANT62782.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
ANT62137.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (130 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (402 aa)
ANT62140.1Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
ANT62185.1Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
ANT62263.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (230 aa)
ANT62278.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
ANT62320.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)
ANT62348.1Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family. (351 aa)
ANT62486.1Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
ANT62495.1Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)
ANT62522.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
ade-2Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (592 aa)
Your Current Organism:
Yangia sp. CCBMM3
NCBI taxonomy Id: 1792508
Other names: Y. sp. CCB-MM3, Yangia sp. CCB-MM3
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