(5 nodes) Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain network (Yangia sp. CCBMM3)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANT62506.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (732 aa)
	ANT59020.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)
	ANT60722.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
	ANT61958.1	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (774 aa)
	ANT62184.1	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)

Your Current Organism:

Yangia sp. CCBMM3

NCBI taxonomy Id: 1792508
Other names: Y. sp. CCB-MM3, Yangia sp. CCB-MM3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANT60722.1	ANT61958.1	AYJ57_10305	AYJ57_16045	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
ANT60722.1	ANT62184.1	AYJ57_10305	AYJ57_17300	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
ANT60722.1	ANT62506.1	AYJ57_10305	AYJ57_19145	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
ANT61958.1	ANT60722.1	AYJ57_16045	AYJ57_10305	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
ANT61958.1	ANT62184.1	AYJ57_16045	AYJ57_17300	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
ANT61958.1	ANT62506.1	AYJ57_16045	AYJ57_19145	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
ANT62184.1	ANT60722.1	AYJ57_17300	AYJ57_10305	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
ANT62184.1	ANT61958.1	AYJ57_17300	AYJ57_16045	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
ANT62184.1	ANT62506.1	AYJ57_17300	AYJ57_19145	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
ANT62506.1	ANT60722.1	AYJ57_19145	AYJ57_10305	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
ANT62506.1	ANT61958.1	AYJ57_19145	AYJ57_16045	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
ANT62506.1	ANT62184.1	AYJ57_19145	AYJ57_17300	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910