(11 nodes) Valine, leucine and isoleucine degradation, and CoA carboxylase activity network (Frondihabitans sp. PAMC28766)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMM22175.1	3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AX769_07510	5-deoxy-glucuronate isomerase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	AMM21598.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	AMM22511.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	AMM21728.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (267 aa)
	AMM21729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (599 aa)
	AMM22529.1	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	AMM21730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (103 aa)
	AMM21735.1	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	AMM21832.1	Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
	AX769_18875	3-hydroxyisobutyryl-CoA hydrolase; Catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HIBADH-related family. (302 aa)

Your Current Organism:

Frondihabitans sp. PAMC28766

NCBI taxonomy Id: 1795630
Other names: F. sp. PAMC 28766, Frondihabitans sp. PAMC 28766, Frondihabitans sp. SR6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMM21598.1	AMM21735.1	AX769_17440	AX769_18255	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AMM21598.1	AMM21832.1	AX769_17440	AX769_18860	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AMM21598.1	AMM22175.1	AX769_17440	AX769_01760	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AMM21598.1	AMM22511.1	AX769_17440	AX769_17445	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AMM21598.1	AMM22529.1	AX769_17440	AX769_18220	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AMM21598.1	AX769_07510	AX769_17440	AX769_07510	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-deoxy-glucuronate isomerase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AMM21598.1	AX769_18875	AX769_17440	AX769_18875	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyisobutyryl-CoA hydrolase; Catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HIBADH-related family.	0.925
AMM21728.1	AMM21729.1	AX769_18210	AX769_18215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AMM21728.1	AMM21730.1	AX769_18210	AX769_18225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
AMM21728.1	AMM21735.1	AX769_18210	AX769_18255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AMM21728.1	AMM22529.1	AX769_18210	AX769_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
AMM21729.1	AMM21728.1	AX769_18215	AX769_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AMM21729.1	AMM21730.1	AX769_18215	AX769_18225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.556
AMM21729.1	AMM22529.1	AX769_18215	AX769_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
AMM21730.1	AMM21728.1	AX769_18225	AX769_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
AMM21730.1	AMM21729.1	AX769_18225	AX769_18215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.556
AMM21730.1	AMM21735.1	AX769_18225	AX769_18255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AMM21730.1	AMM22529.1	AX769_18225	AX769_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AMM21735.1	AMM21598.1	AX769_18255	AX769_17440	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
AMM21735.1	AMM21728.1	AX769_18255	AX769_18210	acetyl-/propionyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.943