STRINGSTRING
pks2_2 pks2_2 eryA_3 eryA_3 lgrD_2 lgrD_2 pks2_1 pks2_1 mbtB_1 mbtB_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pks2_2Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2093 aa)
eryA_3Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3687 aa)
lgrD_2Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2579 aa)
pks2_1Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2107 aa)
mbtB_1Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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