STRINGSTRING
pks2_2 pks2_2 mbtL_1 mbtL_1 ppsA_2 ppsA_2 mbtB_1 mbtB_1 eryA_2 eryA_2 dhbF_3 dhbF_3 mbtF mbtF acpP acpP pks2_1 pks2_1 mbtL_2 mbtL_2 grsA grsA pks13 pks13 lgrD_3 lgrD_3 KLO49015.1 KLO49015.1 lgrD_2 lgrD_2 eryA_3 eryA_3 mbtL_3 mbtL_3 lgrD_4 lgrD_4 fadD9 fadD9 lgrD_1 lgrD_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pks2_2Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2093 aa)
mbtL_1Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
ppsA_2Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1718 aa)
mbtB_1Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
eryA_2Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (997 aa)
dhbF_3Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1817 aa)
mbtFPeptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1476 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (98 aa)
pks2_1Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2107 aa)
mbtL_2Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
grsAAmino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1314 aa)
pks13Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1810 aa)
lgrD_3Gramicidin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (3441 aa)
KLO49015.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (81 aa)
lgrD_2Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2579 aa)
eryA_3Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3687 aa)
mbtL_3Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
lgrD_4Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2565 aa)
fadD9Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1156 aa)
lgrD_1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1161 aa)
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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