14 items (Mycolicibacterium senegalense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fadD9	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1156 aa)
	lgrD_4	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2565 aa)
	lgrD_1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1161 aa)
	pks2_2	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2093 aa)
	lgrD_2	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2579 aa)
	pks13	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1810 aa)
	grsA	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1314 aa)
	pks2_1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2107 aa)
	mbtF	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1476 aa)
	dhbF_3	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1817 aa)
	eryA_2	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (997 aa)
	mbtB_1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1181 aa)
	ppsA_2	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1718 aa)
	eryA_3	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3687 aa)

Your Current Organism:

Mycolicibacterium senegalense

NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dhbF_3	eryA_2	ABW05_28505	ABW05_28510	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
dhbF_3	eryA_3	ABW05_28505	ABW05_14545	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
dhbF_3	grsA	ABW05_28505	ABW05_19000	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
dhbF_3	lgrD_2	ABW05_28505	ABW05_15880	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
dhbF_3	lgrD_4	ABW05_28505	ABW05_06275	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
dhbF_3	mbtB_1	ABW05_28505	ABW05_28530	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
dhbF_3	mbtF	ABW05_28505	ABW05_28500	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
dhbF_3	pks13	ABW05_28505	ABW05_17575	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
dhbF_3	pks2_1	ABW05_28505	ABW05_20005	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
dhbF_3	pks2_2	ABW05_28505	ABW05_02775	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
dhbF_3	ppsA_2	ABW05_28505	ABW05_28540	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
eryA_2	dhbF_3	ABW05_28510	ABW05_28505	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
eryA_2	eryA_3	ABW05_28510	ABW05_14545	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
eryA_2	fadD9	ABW05_28510	ABW05_03740	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
eryA_2	grsA	ABW05_28510	ABW05_19000	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
eryA_2	lgrD_1	ABW05_28510	ABW05_03735	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
eryA_2	lgrD_2	ABW05_28510	ABW05_15880	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
eryA_2	lgrD_4	ABW05_28510	ABW05_06275	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
eryA_2	mbtB_1	ABW05_28510	ABW05_28530	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
eryA_2	mbtF	ABW05_28510	ABW05_28500	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997

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