(22 nodes) Mixed, incl. AMP binding, and Ferredoxin--NADP reductase network (Cupriavidus nantongensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMR78071.1	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	AMR78072.1	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AMR78073.1	benzoyl-CoA-dihydrodiol lyase; Cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
	aroK	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (315 aa)
	AMR78075.1	4-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	AMR78076.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AMR79060.1	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AMR79061.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AMR79062.1	2-aminobenzoate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
	AMR79063.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	AMR79064.1	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (283 aa)
	AMR79065.1	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa)
	AMR79066.1	Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)
	ubiC	Chorismate--pyruvate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. (221 aa)
	AMR80962.1	4-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	AMR80963.1	Phenylacetic acid degradation bifunctional protein PaaZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa)
	AMR80964.1	2-hydroxylaminobenzoate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	aroK-3	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (320 aa)
	AMR80966.1	benzoyl-CoA-dihydrodiol lyase; Cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	AMR80967.1	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	AMR80968.1	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	AMR82021.1	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)

Your Current Organism:

Cupriavidus nantongensis

NCBI taxonomy Id: 1796606
Other names: C. nantongensis, Cupriavidus nantongensis Sun et al. 2016, Cupriavidus sp. X1, KCTC 42909, LMG 29218, LMG:29218, strain X1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMR78071.1	AMR78072.1	A2G96_10120	A2G96_10125	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMR78071.1	AMR78073.1	A2G96_10120	A2G96_10130	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AMR78071.1	AMR78075.1	A2G96_10120	A2G96_10140	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AMR78071.1	AMR78076.1	A2G96_10120	A2G96_10145	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AMR78071.1	AMR79063.1	A2G96_10120	A2G96_15675	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AMR78071.1	AMR79065.1	A2G96_10120	A2G96_15685	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.494
AMR78071.1	AMR79066.1	A2G96_10120	A2G96_15690	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AMR78071.1	AMR80962.1	A2G96_10120	A2G96_24400	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AMR78071.1	AMR80963.1	A2G96_10120	A2G96_24405	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylacetic acid degradation bifunctional protein PaaZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AMR78071.1	AMR80964.1	A2G96_10120	A2G96_24410	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-hydroxylaminobenzoate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AMR78071.1	AMR80966.1	A2G96_10120	A2G96_24420	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AMR78071.1	AMR80967.1	A2G96_10120	A2G96_24425	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AMR78071.1	AMR80968.1	A2G96_10120	A2G96_24430	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AMR78071.1	AMR82021.1	A2G96_10120	A2G96_30305	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AMR78071.1	aroK	A2G96_10120	A2G96_10135	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.899
AMR78071.1	aroK-3	A2G96_10120	A2G96_24415	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.826
AMR78072.1	AMR78071.1	A2G96_10125	A2G96_10120	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMR78072.1	AMR78073.1	A2G96_10125	A2G96_10130	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	benzoyl-CoA-dihydrodiol lyase; Cleaves the ring of 2,3-dihydro-2,3-dihydroxybenzoyl-CoA forming 6-hydroxy-3-hexenoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AMR78072.1	AMR78075.1	A2G96_10125	A2G96_10140	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxybenzoate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
AMR78072.1	AMR78076.1	A2G96_10125	A2G96_10145	benzoyl-CoA oxygenase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814

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