(57 nodes) Mixed, incl. Latent infection - Other responses of Mtb to phagocytosis, and Oligopeptide/dipeptide ABC transporter, C-terminal network (Cupriavidus nantongensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMR76497.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (239 aa)
	AMR76498.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (240 aa)
	AMR76541.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AMR76852.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
	AMR76872.1	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)
	AMR77020.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (914 aa)
	AMR77150.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (764 aa)
	AMR77151.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	msbA	Lipid ABC transporter permease/ATP-binding protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (591 aa)
	AMR77537.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	AMR77538.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AMR77539.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AMR77540.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (320 aa)
	AMR77541.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (319 aa)
	AMR78789.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	AMR78790.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	AMR78791.1	Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AMR78792.1	Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AMR78793.1	Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AMR78794.1	Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AMR78795.1	Glutathione ABC transporter substrate-binding protein; With GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)
	AMR78796.1	Glutathione ABC transporter ATP-binding protein; With GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (634 aa)
	AMR78798.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AMR78806.1	acyl-CoA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AMR78817.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	AMR78933.1	Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S51 family. (238 aa)
	AMR78934.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AMR78935.1	AroM family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	AMR80342.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AMR80346.1	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (547 aa)
	AMR79032.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	AMR79033.1	Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	AMR79034.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	AMR80349.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)
	nodI	Nodulation factor ABC transporter ATP-binding protein NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. (303 aa)
	AMR79166.1	Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AMR79167.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	AMR79199.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
	AMR79214.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (609 aa)
	AMR79570.1	Glutathione ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	AMR79571.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AMR79572.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AMR79573.1	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (322 aa)
	AMR79574.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (321 aa)
	AMR80398.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (346 aa)
	AMR79915.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (332 aa)
	AMR79916.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AMR79917.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AMR79918.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa)
	AMR80403.1	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AMR80036.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AMR82305.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AMR81141.1	GTP cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	AMR81517.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AMR82390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	AMR81759.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AMR82000.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)

Your Current Organism:

Cupriavidus nantongensis

NCBI taxonomy Id: 1796606
Other names: C. nantongensis, Cupriavidus nantongensis Sun et al. 2016, Cupriavidus sp. X1, KCTC 42909, LMG 29218, LMG:29218, strain X1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMR76497.1	AMR76498.1	A2G96_01365	A2G96_01370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AMR76497.1	AMR76872.1	A2G96_01365	A2G96_03440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AMR76497.1	AMR77020.1	A2G96_01365	A2G96_04265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AMR76497.1	AMR77150.1	A2G96_01365	A2G96_05010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
AMR76497.1	AMR77151.1	A2G96_01365	A2G96_05015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
AMR76497.1	AMR79166.1	A2G96_01365	A2G96_16255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
AMR76497.1	AMR79214.1	A2G96_01365	A2G96_16520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
AMR76497.1	AMR79573.1	A2G96_01365	A2G96_18490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.411
AMR76497.1	AMR80403.1	A2G96_01365	A2G96_20940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AMR76497.1	AMR81759.1	A2G96_01365	A2G96_28795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AMR76497.1	msbA	A2G96_01365	A2G96_05270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipid ABC transporter permease/ATP-binding protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.734
AMR76498.1	AMR76497.1	A2G96_01370	A2G96_01365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AMR76541.1	AMR79214.1	A2G96_01610	A2G96_16520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AMR76541.1	AMR80349.1	A2G96_01610	A2G96_15890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AMR76541.1	AMR81759.1	A2G96_01610	A2G96_28795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
AMR76541.1	AMR82000.1	A2G96_01610	A2G96_30180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AMR76541.1	AMR82305.1	A2G96_01610	A2G96_21505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AMR76852.1	AMR78806.1	A2G96_03325	A2G96_14220	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AMR76852.1	AMR78817.1	A2G96_03325	A2G96_14290	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AMR76852.1	AMR80349.1	A2G96_03325	A2G96_15890	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805

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