STRINGSTRING
pnp pnp AMR76283.1 AMR76283.1 AMR80118.1 AMR80118.1 AMR76420.1 AMR76420.1 AMR76521.1 AMR76521.1 AMR76620.1 AMR76620.1 AMR76622.1 AMR76622.1 AMR76650.1 AMR76650.1 cca cca AMR80169.1 AMR80169.1 rhlE rhlE groEL groEL AMR77197.1 AMR77197.1 AMR77256.1 AMR77256.1 hscA hscA eno eno AMR77520.1 AMR77520.1 AMR77704.1 AMR77704.1 AMR77771.1 AMR77771.1 AMR77840.1 AMR77840.1 AMR77901.1 AMR77901.1 AMR78020.1 AMR78020.1 ppk ppk AMR78256.1 AMR78256.1 AMR78257.1 AMR78257.1 AMR78563.1 AMR78563.1 AMR78627.1 AMR78627.1 rnr rnr hfq hfq rho rho ppk-2 ppk-2 rne rne AMR79318.1 AMR79318.1 AMR79335.1 AMR79335.1 pcnB pcnB dnaK dnaK AMR79786.1 AMR79786.1 AMR79797.1 AMR79797.1 AMR79802.1 AMR79802.1 rppH rppH AMR79992.1 AMR79992.1 AMR80103.1 AMR80103.1 AMR80911.1 AMR80911.1 AMR81298.1 AMR81298.1 AMR81831.1 AMR81831.1 AMR81951.1 AMR81951.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (723 aa)
AMR76283.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
AMR80118.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
AMR76420.1DNA topoisomerase III; Decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology. (895 aa)
AMR76521.1ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (473 aa)
AMR76620.1Cobalamin (vitamin B12) synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
AMR76622.1Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
AMR76650.1Polyphosphate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
cca2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (415 aa)
AMR80169.1Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
rhlERNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (512 aa)
groELMolecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (547 aa)
AMR77197.1Involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
AMR77256.1Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
hscAFe-S protein assembly chaperone HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. (621 aa)
enoPhosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (429 aa)
AMR77520.1Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
AMR77704.1DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)
AMR77771.1DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)
AMR77840.1Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
AMR77901.1DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)
AMR78020.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (618 aa)
ppkRNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (700 aa)
AMR78256.1Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology. (940 aa)
AMR78257.1Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heat shock protein 70 family. (615 aa)
AMR78563.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (2180 aa)
AMR78627.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (475 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (864 aa)
hfqRNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (79 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (420 aa)
ppk-2RNA degradosome polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (695 aa)
rneRibonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1045 aa)
AMR79318.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (627 aa)
AMR79335.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (500 aa)
pcnBpoly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (509 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (648 aa)
AMR79786.1Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
AMR79797.1Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)
AMR79802.1UDP-N-acetylmuramate--alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
rppHRNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (227 aa)
AMR79992.1GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
AMR80103.1ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (615 aa)
AMR80911.1Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
AMR81298.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
AMR81831.1Heat-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
AMR81951.1RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
Your Current Organism:
Cupriavidus nantongensis
NCBI taxonomy Id: 1796606
Other names: C. nantongensis, Cupriavidus nantongensis Sun et al. 2016, Cupriavidus sp. X1, KCTC 42909, LMG 29218, LMG:29218, strain X1
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