(8 nodes) Protein of unknown function (DUF3853), and DNA primase activity network (Bacteroides caecimuris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU57072.1	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ANU59690.1	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	ANU59691.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	ANU59692.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (427 aa)
	A4V03_10665	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	ANU59790.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	ANU59791.1	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	ANU59792.1	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)

Your Current Organism:

Bacteroides caecimuris

NCBI taxonomy Id: 1796613
Other names: B. caecimuris, Bacteroides caecimuris Lagkouvardos et al. 2016, Bacteroides sp. I48, DSM 26085, KCTC 15547, strain I48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4V03_10665	ANU57072.1	A4V03_10665	A4V03_05410	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
A4V03_10665	ANU59690.1	A4V03_10665	A4V03_05415	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
A4V03_10665	ANU59691.2	A4V03_10665	A4V03_05420	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
A4V03_10665	ANU59790.2	A4V03_10665	A4V03_10680	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
A4V03_10665	ANU59791.1	A4V03_10665	A4V03_10685	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
A4V03_10665	ANU59792.1	A4V03_10665	A4V03_10690	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
ANU57072.1	A4V03_10665	A4V03_05410	A4V03_10665	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
ANU57072.1	ANU59690.1	A4V03_05410	A4V03_05415	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ANU57072.1	ANU59691.2	A4V03_05410	A4V03_05420	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
ANU57072.1	ANU59692.1	A4V03_05410	A4V03_05435	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.730
ANU57072.1	ANU59790.2	A4V03_05410	A4V03_10680	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
ANU57072.1	ANU59791.1	A4V03_05410	A4V03_10685	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ANU59690.1	A4V03_10665	A4V03_05415	A4V03_10665	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ANU59690.1	ANU57072.1	A4V03_05415	A4V03_05410	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ANU59690.1	ANU59691.2	A4V03_05415	A4V03_05420	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
ANU59690.1	ANU59692.1	A4V03_05415	A4V03_05435	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.	0.821
ANU59690.1	ANU59790.2	A4V03_05415	A4V03_10680	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
ANU59690.1	ANU59792.1	A4V03_05415	A4V03_10690	Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU59691.2	A4V03_10665	A4V03_05420	A4V03_10665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Topoisomerase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
ANU59691.2	ANU57072.1	A4V03_05420	A4V03_05410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765