(9 nodes) Raffinose alpha-galactosidase activity network (Bacteroides caecimuris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU59599.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (810 aa)
	ANU56448.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
	ANU58672.1	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)
	ANU59870.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)
	ANU58700.1	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (948 aa)
	A4V03_16005	tRNA-Pro; Internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	ANU59398.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1169 aa)
	ANU59399.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
	ANU59479.1	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)

Your Current Organism:

Bacteroides caecimuris

NCBI taxonomy Id: 1796613
Other names: B. caecimuris, Bacteroides caecimuris Lagkouvardos et al. 2016, Bacteroides sp. I48, DSM 26085, KCTC 15547, strain I48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4V03_16005	ANU59599.1	A4V03_16005	A4V03_00260	tRNA-Pro; Internal stop; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
ANU56448.1	ANU58672.1	A4V03_01745	A4V03_14780	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
ANU56448.1	ANU58700.1	A4V03_01745	A4V03_14955	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU56448.1	ANU59398.1	A4V03_01745	A4V03_18990	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU56448.1	ANU59399.1	A4V03_01745	A4V03_18995	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU56448.1	ANU59479.1	A4V03_01745	A4V03_19440	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU56448.1	ANU59870.1	A4V03_01745	A4V03_14920	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ANU58672.1	ANU56448.1	A4V03_14780	A4V03_01745	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
ANU58672.1	ANU58700.1	A4V03_14780	A4V03_14955	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58672.1	ANU59398.1	A4V03_14780	A4V03_18990	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58672.1	ANU59399.1	A4V03_14780	A4V03_18995	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58672.1	ANU59479.1	A4V03_14780	A4V03_19440	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58672.1	ANU59870.1	A4V03_14780	A4V03_14920	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ANU58700.1	ANU56448.1	A4V03_14955	A4V03_01745	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58700.1	ANU58672.1	A4V03_14955	A4V03_14780	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU58700.1	ANU59398.1	A4V03_14955	A4V03_18990	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
ANU58700.1	ANU59399.1	A4V03_14955	A4V03_18995	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
ANU58700.1	ANU59479.1	A4V03_14955	A4V03_19440	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
ANU58700.1	ANU59870.1	A4V03_14955	A4V03_14920	Alpha-glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ANU59398.1	ANU56448.1	A4V03_18990	A4V03_01745	Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650