(30 nodes) Starch and sucrose metabolism network (Bacteroides caecimuris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU59597.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (861 aa)
	ANU56448.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (648 aa)
	ANU56635.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	ANU56636.1	Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ANU56900.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	ANU56958.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	ANU57107.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
	ANU57672.1	1,4-alpha-glucan-branching enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
	ANU57737.1	Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	ANU57952.1	Alpha-glucan phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (854 aa)
	ANU58127.1	Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
	pulA	Type I pullulanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (668 aa)
	ANU58309.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	pgi	Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (445 aa)
	ANU58519.1	4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (893 aa)
	ANU58581.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
	ANU58582.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	ANU58672.1	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)
	ANU58674.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
	ANU58690.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (743 aa)
	ANU59870.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)
	ANU58697.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
	ANU58699.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)
	ANU58799.1	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	ANU59201.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (764 aa)
	ANU59921.1	Glycosyl hydrolase family 31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family. (834 aa)
	ANU59207.1	Cycloisomaltooligosaccharide glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	ANU59361.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	ANU59403.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	bglX	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (769 aa)

Your Current Organism:

Bacteroides caecimuris

NCBI taxonomy Id: 1796613
Other names: B. caecimuris, Bacteroides caecimuris Lagkouvardos et al. 2016, Bacteroides sp. I48, DSM 26085, KCTC 15547, strain I48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU56448.1	ANU56635.1	A4V03_01745	A4V03_02850	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
ANU56448.1	ANU56900.1	A4V03_01745	A4V03_04345	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ANU56448.1	ANU57107.1	A4V03_01745	A4V03_05630	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
ANU56448.1	ANU58309.1	A4V03_01745	A4V03_12620	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ANU56448.1	ANU58519.1	A4V03_01745	A4V03_13835	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-alpha-glucanotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ANU56448.1	ANU58581.1	A4V03_01745	A4V03_14195	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANU56448.1	ANU58672.1	A4V03_01745	A4V03_14780	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Retaining alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
ANU56448.1	ANU58674.1	A4V03_01745	A4V03_14795	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
ANU56448.1	ANU58690.1	A4V03_01745	A4V03_14885	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANU56448.1	ANU58697.1	A4V03_01745	A4V03_14930	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ANU56448.1	ANU58699.1	A4V03_01745	A4V03_14940	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANU56448.1	ANU59201.1	A4V03_01745	A4V03_17915	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANU56448.1	ANU59361.1	A4V03_01745	A4V03_18790	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
ANU56448.1	ANU59597.1	A4V03_01745	A4V03_00180	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANU56448.1	ANU59870.1	A4V03_01745	A4V03_14920	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ANU56448.1	ANU59921.1	A4V03_01745	A4V03_17945	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.914
ANU56448.1	bglX	A4V03_01745	A4V03_20080	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.664
ANU56635.1	ANU56448.1	A4V03_02850	A4V03_01745	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
ANU56635.1	ANU56900.1	A4V03_02850	A4V03_04345	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
ANU56635.1	ANU57107.1	A4V03_02850	A4V03_05630	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900