(25 nodes) ABC transporters network (Bacteroides caecimuris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lolD	Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (218 aa)
	lptB	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	ANU56350.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	ANU56351.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ANU57624.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	ANU57948.1	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	ANU57949.1	Putrescine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	ANU57950.1	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	potA	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (461 aa)
	ANU58041.1	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	ANU58095.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	ANU58234.1	Molybdenum ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	pstB	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (255 aa)
	pstB-2	Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (255 aa)
	pstA	Phosphate ABC transporter, permease protein PstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	pstC	Phosphate ABC transporter permease subunit PstC; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (285 aa)
	pstS	Phosphate ABC transporter substrate-binding protein PstS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PstS family. (353 aa)
	ANU58516.1	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANU58556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	ANU58660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (632 aa)
	ANU59107.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	ANU59293.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (293 aa)
	ANU59930.2	Zinc ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	ANU59319.1	Zinc ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. (309 aa)
	ANU59460.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)

Your Current Organism:

Bacteroides caecimuris

NCBI taxonomy Id: 1796613
Other names: B. caecimuris, Bacteroides caecimuris Lagkouvardos et al. 2016, Bacteroides sp. I48, DSM 26085, KCTC 15547, strain I48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANU56350.1	ANU56351.1	A4V03_01175	A4V03_01180	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU56350.1	ANU57624.1	A4V03_01175	A4V03_08630	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ANU56350.1	ANU58516.1	A4V03_01175	A4V03_13815	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ANU56350.1	ANU59460.1	A4V03_01175	A4V03_19335	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ANU56350.1	lptB	A4V03_01175	A4V03_01170	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
ANU56351.1	ANU56350.1	A4V03_01180	A4V03_01175	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU56351.1	ANU58516.1	A4V03_01180	A4V03_13815	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
ANU56351.1	lptB	A4V03_01180	A4V03_01170	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
ANU57624.1	ANU56350.1	A4V03_08630	A4V03_01175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ANU57624.1	ANU58516.1	A4V03_08630	A4V03_13815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
ANU57624.1	ANU58660.1	A4V03_08630	A4V03_14680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
ANU57624.1	ANU59460.1	A4V03_08630	A4V03_19335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
ANU57624.1	lptB	A4V03_08630	A4V03_01170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ANU57948.1	ANU57949.1	A4V03_10490	A4V03_10495	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putrescine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU57948.1	ANU57950.1	A4V03_10490	A4V03_10500	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU57948.1	potA	A4V03_10490	A4V03_10505	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.998
ANU57949.1	ANU57948.1	A4V03_10495	A4V03_10490	Putrescine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU57949.1	ANU57950.1	A4V03_10495	A4V03_10500	Putrescine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ANU57949.1	potA	A4V03_10495	A4V03_10505	Putrescine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.998
ANU57950.1	ANU57948.1	A4V03_10500	A4V03_10490	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999