(92 nodes) ABC-type transporter activity network (Blautia sp. YL58)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANU78481.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU75636.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	ANU75743.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
	ANU75754.1	Lantibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	ANU75755.1	Lantibiotic ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	ANU75818.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	A4V09_08675	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (369 aa)
	ANU78609.2	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	ANU75840.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
	ANU75841.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	ANU75878.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	A4V09_09180	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
	ANU75920.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)
	ANU75980.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (218 aa)
	ANU76025.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	ANU76090.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	ANU76157.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ANU76158.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	ANU78629.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ANU76181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	ANU76182.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	ANU76393.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	ANU76412.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANU76427.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	ANU76457.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	ANU76467.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (378 aa)
	ANU76470.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ANU76480.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	potA-2	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (357 aa)
	ANU76489.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	ANU76748.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU78686.2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	ANU76874.1	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	ANU76938.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	A4V09_15115	ABC transporter; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	ANU77065.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ANU77121.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (591 aa)
	ANU77122.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	ANU77131.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	ANU77179.1	Arabinose transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	ANU77261.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	ANU77302.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANU77329.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	ANU77413.1	Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANU77428.2	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	ANU78745.2	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ANU78760.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	ANU78762.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANU78765.2	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	ANU77800.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	ANU77813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)
	A4V09_20255	Phosphohydrolase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	ANU77881.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANU77932.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	ANU77950.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	ANU78019.2	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ANU78787.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	ANU78161.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (370 aa)
	ANU78262.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	ANU78271.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ANU78280.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	ANU78293.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (415 aa)
	ANU78296.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ANU78357.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ANU78380.1	Thiamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	ANU78386.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANU78394.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	A4V09_24340	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
	ANU74637.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ANU74587.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (69 aa)
	ANU74579.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (613 aa)
	ANU74578.2	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)
	ANU74567.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	ANU74553.1	Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU74540.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ANU74539.2	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	ANU74524.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	ANU74518.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	ANU74478.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	ANU75457.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (417 aa)
	cobQ	Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (502 aa)
	cobD	Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (323 aa)
	potB	Spermidine/putrescine ABC transporter permease; Can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	potA	Spermidine/putrescine ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (366 aa)
	ANU78537.2	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	ANU74920.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	ANU74860.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	ANU74853.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	ANU74793.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)
	ANU74792.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (721 aa)
	ANU74730.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	ANU74716.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)

Your Current Organism:

Blautia sp. YL58

NCBI taxonomy Id: 1796616
Other names: B. sp. YL58

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4V09_08675	ANU74518.1	A4V09_08675	A4V09_01320	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
A4V09_08675	ANU74553.1	A4V09_08675	A4V09_01520	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
A4V09_08675	ANU74567.1	A4V09_08675	A4V09_01595	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
A4V09_08675	ANU74587.1	A4V09_08675	A4V09_01700	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.485
A4V09_08675	ANU74637.1	A4V09_08675	A4V09_01995	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
A4V09_08675	ANU74853.1	A4V09_08675	A4V09_03200	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
A4V09_08675	ANU74860.1	A4V09_08675	A4V09_03235	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
A4V09_08675	ANU74920.1	A4V09_08675	A4V09_03580	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
A4V09_08675	ANU75636.1	A4V09_08675	A4V09_07570	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
A4V09_08675	ANU76025.1	A4V09_08675	A4V09_09765	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
A4V09_08675	ANU76090.1	A4V09_08675	A4V09_10105	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
A4V09_08675	ANU76412.1	A4V09_08675	A4V09_11915	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
A4V09_08675	ANU76427.1	A4V09_08675	A4V09_12005	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
A4V09_08675	ANU76470.1	A4V09_08675	A4V09_12250	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
A4V09_08675	ANU76480.1	A4V09_08675	A4V09_12305	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
A4V09_08675	ANU76489.1	A4V09_08675	A4V09_12350	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
A4V09_08675	ANU76748.1	A4V09_08675	A4V09_13840	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
A4V09_08675	ANU76874.1	A4V09_08675	A4V09_14575	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
A4V09_08675	ANU76938.1	A4V09_08675	A4V09_14935	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
A4V09_08675	ANU77065.1	A4V09_08675	A4V09_15630	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663