Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| A2Y13_11805 | OHB42716.1 | A2Y13_11805 | A2Y13_08685 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.959 |
| A2Y13_11805 | OHB43838.1 | A2Y13_11805 | A2Y13_05895 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.960 |
| A2Y13_11805 | OHB44169.1 | A2Y13_11805 | A2Y13_06675 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.457 |
| A2Y13_11805 | dnaX | A2Y13_11805 | A2Y13_05635 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.967 |
| A2Y13_11805 | recO | A2Y13_11805 | A2Y13_09340 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.434 |
| A2Y13_11805 | topA | A2Y13_11805 | A2Y13_10015 | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.504 |
| OHB42346.1 | OHB45339.1 | A2Y13_12740 | A2Y13_11005 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.530 |
| OHB42346.1 | topA | A2Y13_12740 | A2Y13_10015 | single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.806 |
| OHB42716.1 | A2Y13_11805 | A2Y13_08685 | A2Y13_11805 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | 0.959 |
| OHB42716.1 | OHB43838.1 | A2Y13_08685 | A2Y13_05895 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.951 |
| OHB42716.1 | OHB44169.1 | A2Y13_08685 | A2Y13_06675 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.754 |
| OHB42716.1 | OHB45339.1 | A2Y13_08685 | A2Y13_11005 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.880 |
| OHB42716.1 | dnaX | A2Y13_08685 | A2Y13_05635 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.664 |
| OHB42716.1 | recO | A2Y13_08685 | A2Y13_09340 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.500 |
| OHB42716.1 | recR | A2Y13_08685 | A2Y13_05640 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.602 |
| OHB42716.1 | topA | A2Y13_08685 | A2Y13_10015 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.479 |
| OHB43838.1 | A2Y13_11805 | A2Y13_05895 | A2Y13_11805 | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. | 0.960 |
| OHB43838.1 | OHB42716.1 | A2Y13_05895 | A2Y13_08685 | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.951 |
| OHB43838.1 | OHB43995.1 | A2Y13_05895 | A2Y13_00870 | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.640 |
| OHB43838.1 | OHB44169.1 | A2Y13_05895 | A2Y13_06675 | DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.487 |
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