6 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_14341	Uncharacterized protein. (261 aa)
	JCGZ_00789	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (193 aa)
	JCGZ_02632	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (289 aa)
	JCGZ_08729	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (276 aa)
	JCGZ_04648	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (117 aa)
	JCGZ_08498	Uncharacterized protein. (292 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_00789	JCGZ_02632	A0A067KSB8	A0A067KTX9	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.983
JCGZ_00789	JCGZ_04648	A0A067KSB8	A0A067L0I2	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.987
JCGZ_00789	JCGZ_08498	A0A067KSB8	A0A067LDF9	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.990
JCGZ_00789	JCGZ_08729	A0A067KSB8	A0A067KUY1	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.994
JCGZ_00789	JCGZ_14341	A0A067KSB8	A0A067K8G4	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.981
JCGZ_02632	JCGZ_00789	A0A067KTX9	A0A067KSB8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.983
JCGZ_02632	JCGZ_04648	A0A067KTX9	A0A067L0I2	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.988
JCGZ_02632	JCGZ_08498	A0A067KTX9	A0A067LDF9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.962
JCGZ_02632	JCGZ_08729	A0A067KTX9	A0A067KUY1	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.986
JCGZ_02632	JCGZ_14341	A0A067KTX9	A0A067K8G4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.989
JCGZ_04648	JCGZ_00789	A0A067L0I2	A0A067KSB8	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.987
JCGZ_04648	JCGZ_02632	A0A067L0I2	A0A067KTX9	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.988
JCGZ_04648	JCGZ_08498	A0A067L0I2	A0A067LDF9	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	Uncharacterized protein.	0.970
JCGZ_04648	JCGZ_08729	A0A067L0I2	A0A067KUY1	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.992
JCGZ_04648	JCGZ_14341	A0A067L0I2	A0A067K8G4	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	Uncharacterized protein.	0.992
JCGZ_08498	JCGZ_00789	A0A067LDF9	A0A067KSB8	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.990
JCGZ_08498	JCGZ_02632	A0A067LDF9	A0A067KTX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.962
JCGZ_08498	JCGZ_04648	A0A067LDF9	A0A067L0I2	Uncharacterized protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.970
JCGZ_08498	JCGZ_08729	A0A067LDF9	A0A067KUY1	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.986
JCGZ_08498	JCGZ_14341	A0A067LDF9	A0A067K8G4	Uncharacterized protein.	Uncharacterized protein.	0.979