(12 nodes) Mitochondrial ribosome network (Jatropha curcas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_21197	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (193 aa)
	JCGZ_24175	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (266 aa)
	JCGZ_20175	Uncharacterized protein. (199 aa)
	JCGZ_20520	Ribosomal_TL5_C domain-containing protein. (256 aa)
	JCGZ_10715	MRP-S28 domain-containing protein. (420 aa)
	JCGZ_10363	Uncharacterized protein. (194 aa)
	JCGZ_24752	Uncharacterized protein. (143 aa)
	JCGZ_26585	Uncharacterized protein. (92 aa)
	JCGZ_24040	Uncharacterized protein. (171 aa)
	JCGZ_24065	Uncharacterized protein. (231 aa)
	JCGZ_05721	Uncharacterized protein. (535 aa)
	JCGZ_10175	Uncharacterized protein. (133 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_05721	JCGZ_10175	A0A067LJ39	A0A067LNB8	Uncharacterized protein.	Uncharacterized protein.	0.973
JCGZ_05721	JCGZ_10363	A0A067LJ39	A0A067KU47	Uncharacterized protein.	Uncharacterized protein.	0.935
JCGZ_05721	JCGZ_10715	A0A067LJ39	A0A067KG29	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.916
JCGZ_05721	JCGZ_20175	A0A067LJ39	A0A067JTR1	Uncharacterized protein.	Uncharacterized protein.	0.918
JCGZ_05721	JCGZ_20520	A0A067LJ39	A0A067K0P0	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.939
JCGZ_05721	JCGZ_21197	A0A067LJ39	A0A067JAC9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.933
JCGZ_05721	JCGZ_24040	A0A067LJ39	A0A067LED8	Uncharacterized protein.	Uncharacterized protein.	0.918
JCGZ_05721	JCGZ_24065	A0A067LJ39	A0A067LEG0	Uncharacterized protein.	Uncharacterized protein.	0.978
JCGZ_05721	JCGZ_24175	A0A067LJ39	A0A067JP44	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.937
JCGZ_05721	JCGZ_24752	A0A067LJ39	A0A067L0M9	Uncharacterized protein.	Uncharacterized protein.	0.974
JCGZ_05721	JCGZ_26585	A0A067LJ39	A0A067L4J9	Uncharacterized protein.	Uncharacterized protein.	0.948
JCGZ_10175	JCGZ_05721	A0A067LNB8	A0A067LJ39	Uncharacterized protein.	Uncharacterized protein.	0.973
JCGZ_10175	JCGZ_10363	A0A067LNB8	A0A067KU47	Uncharacterized protein.	Uncharacterized protein.	0.981
JCGZ_10175	JCGZ_10715	A0A067LNB8	A0A067KG29	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.944
JCGZ_10175	JCGZ_20175	A0A067LNB8	A0A067JTR1	Uncharacterized protein.	Uncharacterized protein.	0.977
JCGZ_10175	JCGZ_20520	A0A067LNB8	A0A067K0P0	Uncharacterized protein.	Ribosomal_TL5_C domain-containing protein.	0.890
JCGZ_10175	JCGZ_21197	A0A067LNB8	A0A067JAC9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.887
JCGZ_10175	JCGZ_24040	A0A067LNB8	A0A067LED8	Uncharacterized protein.	Uncharacterized protein.	0.977
JCGZ_10175	JCGZ_24065	A0A067LNB8	A0A067LEG0	Uncharacterized protein.	Uncharacterized protein.	0.979
JCGZ_10175	JCGZ_24175	A0A067LNB8	A0A067JP44	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.967